Update configure and build for MRtrix3Tissue user experience

As with set_path, this should avoid confusion for users, so it's clear for them that they are interacting with the MRtrix3Tissue fork. As with set_path, this is made clear at all times, and the relation to MRtrix3 is emphasised at a few key points. For optional assistance with or bug reporting on the configure script, they are also kindly referred to the MRtrix3 community: problems or bugs with this script are highly likely to equally apply to MRtrix3 and MRtrix3Tissue, so this would be beneficial to the community as a whole. This may also allow for bug fixing in MRtrix3, should the opportunity arise.

Author: thijsdhollander

build

@@ -7,9 +7,11 @@ USAGE
 
 DESCRIPTION
 
-    This script will compile and link the MRtrix3 source tree. It relies on the
-    configuration file produced by ./configure - please ensure you have run
-    this first.
+    This script will compile and link the MRtrix3Tissue source tree. It relies
+    on the configuration file produced by ./configure - please ensure you have
+    run this first.
+
+    MRtrix3Tissue is a fork of the MRtrix3 project.
 
     In most cases, a simple invocation is all that is required:
 

configure

@@ -236,7 +236,7 @@ if len(build_options):
   build_type += ' with ' + ', '.join (build_options)
 
 report ("""
-MRtrix build type requested: """ + build_type + '\n\n')
+MRtrix3Tissue build type requested: """ + build_type + '\n\n' + 'MRtrix3Tissue is a fork of the MRtrix3 project' + '\n\n')
 
 
 # remove any mention of anaconda from PATH:
@@ -391,10 +391,15 @@ def linker_flags_hint (name, var, flags):
 
 configure_log_hint='''
 
-  See the file 'configure.log' for details. If this doesn't help and you need
-  further assistance, please post on the MRtrix3 community forum
-  (http://community.mrtrix.org/), and make sure to include the full contents of
-  the 'configure.log' file.
+  See the file 'configure.log' for details. MRtrix3Tissue is a fork of the
+  MRtrix3 project. The functionality of the configure script is unmodified,
+  so when experiencing problems with this script, you might be able to find
+  assistance in the MRtrix3 community forum at http://community.mrtrix.org/.
+  Make sure to include the full contents of the 'configure.log' file to
+  enable community members to help you efficiently. If you believe there are
+  bugs or other issues with the script, it might be useful to flag these to
+  MRtrix3 developers as well, as bug fixes are likely to be useful to both
+  MRtrix3 and MRtrix3Tissue.
 '''
 
 qt_path_hint='''
@@ -594,15 +599,15 @@ def compile_check (full_name, name, cflags, ldflags, code, cflags_env=None, cfla
       hint = configure_log_hint
     error ('error compiling ' + name + ''' application!
 
-    MRtrix3 was unable to compile a test program involving ''' + name + '.' + hint)
+    MRtrix3Tissue was unable to compile a test program involving ''' + name + '.' + hint)
   except LinkError as e:
     if cflags_env and cflags_hint:
       hint = linker_flags_hint (name, ldflags_env, ldflags_hint)
     else:
       hint = configure_log_hint
     error ('error linking ' + name + ''' application!
 
-    MRtrix3 was unable to link a test program involving ''' + name + '.' + hint)
+    MRtrix3Tissue was unable to link a test program involving ''' + name + '.' + hint)
   except RuntimeError:
     error ('''runtime error!
 
@@ -761,7 +766,7 @@ if not noshared:
         except LinkError:
           error ('''linker not found!
 
-  MRtrix3 was unable to employ the linker program for shared library generation.''' + compiler_hint ('shared library linker', 'LDLIB_FLAGS', '"-L/usr/local/lib"', 'LDLIB_ARGS', '"-shared LDLIB_FLAGS OBJECTS -o LIB"'))
+  MRtrix3Tissue was unable to employ the linker program for shared library generation.''' + compiler_hint ('shared library linker', 'LDLIB_FLAGS', '"-L/usr/local/lib"', 'LDLIB_ARGS', '"-shared LDLIB_FLAGS OBJECTS -o LIB"'))
         except:
           error ('unexpected exception!' + configure_log_hint)
 
@@ -1038,7 +1043,7 @@ if not nogui:
   except OSError:
     error (''' Qt moc not found!
 
-  MRtrix3 was unable to locate the Qt meta-object compiler 'moc'.''' + qt_path_hint)
+  MRtrix3Tissue was unable to locate the Qt meta-object compiler 'moc'.''' + qt_path_hint)
   except:
     error ('unexpected exception!' + configure_log_hint)
 
@@ -1058,7 +1063,7 @@ if not nogui:
   except OSError:
     error (''' Qt qmake not found!
 
-  MRtrix3 was unable to locate the Qt command 'qmake'.''' + qt_path_hint)
+  MRtrix3Tissue was unable to locate the Qt command 'qmake'.''' + qt_path_hint)
   except:
     error ('unexpected exception!' + configure_log_hint)
 
@@ -1081,7 +1086,7 @@ if not nogui:
   except OSError:
     error (''' Qt rcc not found!
 
-  MRtrix3 was unable to locate the Qt command 'rcc'.''' + qt_path_hint)
+  MRtrix3Tissue was unable to locate the Qt command 'rcc'.''' + qt_path_hint)
   except:
     error ('unexpected exception!' + configure_log_hint)
 
@@ -1303,7 +1308,7 @@ cache = open (cache_filename, 'w')
 
 cache.write ("""#!/usr/bin/python
 #
-# autogenerated by MRtrix configure script
+# autogenerated by MRtrix3Tissue configure script
 #
 # configure output:
 """)