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Merge pull request #706 from maxfirmbach/Remove-Epetra-related-variable-naming
Remove Epetra related variable naming and old comments
2 parents e818ddf + f19ce84 commit b1c3b8c

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153 files changed

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‎src/ale/4C_ale_ale3.hpp‎

Lines changed: 28 additions & 22 deletions
Original file line numberDiff line numberDiff line change
@@ -404,20 +404,23 @@ namespace Discret
404404
///< configuration (false)
405405
) = 0;
406406

407-
virtual void static_ke_nonlinear(Ale3* ele, ///< pointer to element
408-
Core::FE::Discretization& discretization, ///< discretization
409-
std::vector<int>& lm, ///< node owner procs
410-
Core::LinAlg::SerialDenseMatrix& sys_mat, ///< element stiffness matrix (to be filled)
411-
Core::LinAlg::SerialDenseVector& residual, ///< element residual vector (to be filled)
412-
std::vector<double>& my_dispnp, ///< nodal displacements
413-
Teuchos::ParameterList& params, ///< parameter list
407+
virtual void static_ke_nonlinear(Ale3* ele, ///< pointer to element
408+
Core::FE::Discretization& discretization, ///< discretization
409+
std::vector<int>& lm, ///< node owner procs
410+
Core::LinAlg::SerialDenseMatrix&
411+
element_matrix, ///< element stiffness matrix (to be filled)
412+
Core::LinAlg::SerialDenseVector&
413+
element_residual, ///< element residual vector (to be filled)
414+
std::vector<double>& my_dispnp, ///< nodal displacements
415+
Teuchos::ParameterList& params, ///< parameter list
414416
const bool spatialconfiguration ///< use spatial configuration (true), material
415417
///< configuration (false)
416418
) = 0;
417419

418-
virtual void static_ke_laplace(Ale3* ele, ///< pointer to element
419-
Core::FE::Discretization& dis, ///< discretization
420-
Core::LinAlg::SerialDenseMatrix& sys_mat, ///< element stiffnes matrix (to be filled)
420+
virtual void static_ke_laplace(Ale3* ele, ///< pointer to element
421+
Core::FE::Discretization& dis, ///< discretization
422+
Core::LinAlg::SerialDenseMatrix&
423+
element_matrix, ///< element stiffnes matrix (to be filled)
421424
Core::LinAlg::SerialDenseVector& residual, ///< element residual vector (to be filled)
422425
std::vector<double>& my_dispnp, ///< nodal displacements
423426
std::shared_ptr<Core::Mat::Material> material, ///< material law
@@ -437,9 +440,10 @@ namespace Discret
437440
static Ale3Impl<distype>* instance(
438441
Core::Utils::SingletonAction action = Core::Utils::SingletonAction::create);
439442

440-
void static_ke_laplace(Ale3* ele, ///< pointer to element
441-
Core::FE::Discretization& dis, ///< discretization
442-
Core::LinAlg::SerialDenseMatrix& sys_mat, ///< element stiffnes matrix (to be filled)
443+
void static_ke_laplace(Ale3* ele, ///< pointer to element
444+
Core::FE::Discretization& dis, ///< discretization
445+
Core::LinAlg::SerialDenseMatrix&
446+
element_matrix, ///< element stiffnes matrix (to be filled)
443447
Core::LinAlg::SerialDenseVector& residual, ///< element residual vector (to be filled)
444448
std::vector<double>& my_dispnp, ///< nodal displacements
445449
std::shared_ptr<Core::Mat::Material> material, ///< material law
@@ -449,21 +453,23 @@ namespace Discret
449453

450454
void static_ke_spring(Ale3* ele, ///< pointer to element
451455
Core::LinAlg::SerialDenseMatrix&
452-
sys_mat_epetra, ///< element stiffness matrix (to be filled)
456+
element_matrix, ///< element stiffness matrix (to be filled)
453457
Core::LinAlg::SerialDenseVector&
454-
residual_epetra, ///< element residual vector (to be filled)
458+
element_residual, ///< element residual vector (to be filled)
455459
const std::vector<double>& displacements, ///< nodal displacements
456460
const bool spatialconfiguration ///< use spatial configuration (true), material
457461
///< configuration (false)
458462
) override;
459463

460-
void static_ke_nonlinear(Ale3* ele, ///< pointer to element
461-
Core::FE::Discretization& discretization, ///< discretization
462-
std::vector<int>& lm, ///< node owner procs
463-
Core::LinAlg::SerialDenseMatrix& sys_mat, ///< element stiffness matrix (to be filled)
464-
Core::LinAlg::SerialDenseVector& residual, ///< element residual vector (to be filled)
465-
std::vector<double>& my_dispnp, ///< nodal displacements
466-
Teuchos::ParameterList& params, ///< parameter list
464+
void static_ke_nonlinear(Ale3* ele, ///< pointer to element
465+
Core::FE::Discretization& discretization, ///< discretization
466+
std::vector<int>& lm, ///< node owner procs
467+
Core::LinAlg::SerialDenseMatrix&
468+
element_matrix, ///< element stiffness matrix (to be filled)
469+
Core::LinAlg::SerialDenseVector&
470+
element_residual, ///< element residual vector (to be filled)
471+
std::vector<double>& my_dispnp, ///< nodal displacements
472+
Teuchos::ParameterList& params, ///< parameter list
467473
const bool spatialconfiguration ///< use spatial configuration (true), material
468474
///< configuration (false)
469475
) override;

‎src/ale/4C_ale_ale3_evaluate.cpp‎

Lines changed: 10 additions & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -911,12 +911,12 @@ inline void Discret::Elements::Ale3Impl<distype>::ale3_tors_spring_nurbs27(
911911
/*----------------------------------------------------------------------------*/
912912
template <Core::FE::CellType distype>
913913
void Discret::Elements::Ale3Impl<distype>::static_ke_spring(Ale3* ele,
914-
Core::LinAlg::SerialDenseMatrix& sys_mat_epetra,
915-
Core::LinAlg::SerialDenseVector& residual_epetra, const std::vector<double>& displacements,
914+
Core::LinAlg::SerialDenseMatrix& element_matrix,
915+
Core::LinAlg::SerialDenseVector& element_residual, const std::vector<double>& displacements,
916916
const bool spatialconfiguration)
917917
{
918-
Core::LinAlg::Matrix<3 * iel, 3 * iel> sys_mat(sys_mat_epetra.values(), true);
919-
Core::LinAlg::Matrix<3 * iel, 1> residual(residual_epetra.values(), true);
918+
Core::LinAlg::Matrix<3 * iel, 3 * iel> sys_mat(element_matrix.values(), true);
919+
Core::LinAlg::Matrix<3 * iel, 1> residual(element_residual.values(), true);
920920
int node_i, node_j; // end nodes of spring
921921
double length; // length of edge
922922
double dx, dy, dz; // deltas in each direction
@@ -1347,13 +1347,12 @@ void Discret::Elements::Ale3Impl<distype>::static_ke_spring(Ale3* ele,
13471347
template <Core::FE::CellType distype>
13481348
void Discret::Elements::Ale3Impl<distype>::static_ke_nonlinear(Ale3* ele,
13491349
Core::FE::Discretization& dis, std::vector<int>& lm,
1350-
Core::LinAlg::SerialDenseMatrix& sys_mat_epetra,
1351-
Core::LinAlg::SerialDenseVector& residual_epetra, std::vector<double>& my_dispnp,
1350+
Core::LinAlg::SerialDenseMatrix& element_matrix,
1351+
Core::LinAlg::SerialDenseVector& element_residual, std::vector<double>& my_dispnp,
13521352
Teuchos::ParameterList& params, const bool spatialconfiguration)
13531353
{
13541354
const int numdof = NODDOF_ALE3 * iel;
1355-
// A view to sys_mat_epetra
1356-
Core::LinAlg::Matrix<numdof, numdof> sys_mat(sys_mat_epetra.values(), true);
1355+
Core::LinAlg::Matrix<numdof, numdof> sys_mat(element_matrix.values(), true);
13571356
// update element geometry
13581357
Core::LinAlg::Matrix<iel, NUMDIM_ALE3> xrefe; // material coord. of element
13591358
Core::LinAlg::Matrix<iel, NUMDIM_ALE3> xcurr; // current coord. of element
@@ -1530,7 +1529,7 @@ void Discret::Elements::Ale3Impl<distype>::static_ke_nonlinear(Ale3* ele,
15301529
// end of call material law ccccccccccccccccccccccccccccccccccccccccccccccc
15311530

15321531
// integrate internal force vector f = f + (B^T . sigma) * detJ * w(gp)
1533-
Core::LinAlg::Matrix<numdof, 1> residual(residual_epetra, true);
1532+
Core::LinAlg::Matrix<numdof, 1> residual(element_residual, true);
15341533
residual.multiply_tn(detJ * intpoints.qwgt[iquad], bop, stress_f, 1.0);
15351534

15361535
// integrate `elastic' and `initial-displacement' stiffness matrix
@@ -1570,7 +1569,7 @@ void Discret::Elements::Ale3Impl<distype>::static_ke_nonlinear(Ale3* ele,
15701569
/*----------------------------------------------------------------------------*/
15711570
template <Core::FE::CellType distype>
15721571
void Discret::Elements::Ale3Impl<distype>::static_ke_laplace(Ale3* ele,
1573-
Core::FE::Discretization& dis, Core::LinAlg::SerialDenseMatrix& sys_mat_epetra,
1572+
Core::FE::Discretization& dis, Core::LinAlg::SerialDenseMatrix& element_matrix,
15741573
Core::LinAlg::SerialDenseVector& residual, std::vector<double>& my_dispnp,
15751574
std::shared_ptr<Core::Mat::Material> material, const bool spatialconfiguration)
15761575
{
@@ -1579,8 +1578,7 @@ void Discret::Elements::Ale3Impl<distype>::static_ke_laplace(Ale3* ele,
15791578
// "using it.");
15801579

15811580
const int nd = 3 * iel;
1582-
// A view to sys_mat_epetra
1583-
Core::LinAlg::Matrix<nd, nd> sys_mat(sys_mat_epetra.values(), true);
1581+
Core::LinAlg::Matrix<nd, nd> sys_mat(element_matrix.values(), true);
15841582

15851583
// get material using class StVenantKirchhoff
15861584
// if (material->material_type()!=Core::Materials::m_stvenant)

‎src/art_net/4C_art_net_artery_ele_calc_lin_exp.cpp‎

Lines changed: 16 additions & 21 deletions
Original file line numberDiff line numberDiff line change
@@ -67,18 +67,17 @@ Discret::Elements::ArteryEleCalcLinExp<distype>::instance(
6767
template <Core::FE::CellType distype>
6868
int Discret::Elements::ArteryEleCalcLinExp<distype>::evaluate(Artery* ele,
6969
Teuchos::ParameterList& params, Core::FE::Discretization& discretization,
70-
Core::Elements::LocationArray& la, Core::LinAlg::SerialDenseMatrix& elemat1_epetra,
71-
Core::LinAlg::SerialDenseMatrix& elemat2_epetra,
72-
Core::LinAlg::SerialDenseVector& elevec1_epetra,
73-
Core::LinAlg::SerialDenseVector& elevec2_epetra,
74-
Core::LinAlg::SerialDenseVector& elevec3_epetra, std::shared_ptr<Core::Mat::Material> mat)
70+
Core::Elements::LocationArray& la, Core::LinAlg::SerialDenseMatrix& elemat1,
71+
Core::LinAlg::SerialDenseMatrix& elemat2, Core::LinAlg::SerialDenseVector& elevec1,
72+
Core::LinAlg::SerialDenseVector& elevec2, Core::LinAlg::SerialDenseVector& elevec3,
73+
std::shared_ptr<Core::Mat::Material> mat)
7574
{
7675
// the number of nodes
7776
const int numnode = my::iel_;
7877

7978
// construct views
80-
Core::LinAlg::Matrix<2 * my::iel_, 2 * my::iel_> elemat1(elemat1_epetra.values(), true);
81-
Core::LinAlg::Matrix<2 * my::iel_, 1> elevec1(elevec1_epetra.values(), true);
79+
Core::LinAlg::Matrix<2 * my::iel_, 2 * my::iel_> elemat_1(elemat1.values(), true);
80+
Core::LinAlg::Matrix<2 * my::iel_, 1> elevec_1(elevec1.values(), true);
8281
// elemat2, elevec2, and elevec3 are never used anyway
8382

8483
//----------------------------------------------------------------------
@@ -122,7 +121,7 @@ int Discret::Elements::ArteryEleCalcLinExp<distype>::evaluate(Artery* ele,
122121
// ---------------------------------------------------------------------
123122
// call routine for calculating element matrix and right hand side
124123
// ---------------------------------------------------------------------
125-
sysmat(ele, eqnp, eareanp, elemat1, elevec1, mat, dt);
124+
sysmat(ele, eqnp, eareanp, elemat_1, elevec_1, mat, dt);
126125

127126

128127
return 0;
@@ -133,11 +132,9 @@ template <Core::FE::CellType distype>
133132
int Discret::Elements::ArteryEleCalcLinExp<distype>::evaluate_service(Artery* ele,
134133
const Arteries::Action action, Teuchos::ParameterList& params,
135134
Core::FE::Discretization& discretization, Core::Elements::LocationArray& la,
136-
Core::LinAlg::SerialDenseMatrix& elemat1_epetra,
137-
Core::LinAlg::SerialDenseMatrix& elemat2_epetra,
138-
Core::LinAlg::SerialDenseVector& elevec1_epetra,
139-
Core::LinAlg::SerialDenseVector& elevec2_epetra,
140-
Core::LinAlg::SerialDenseVector& elevec3_epetra, std::shared_ptr<Core::Mat::Material> mat)
135+
Core::LinAlg::SerialDenseMatrix& elemat1, Core::LinAlg::SerialDenseMatrix& elemat2,
136+
Core::LinAlg::SerialDenseVector& elevec1, Core::LinAlg::SerialDenseVector& elevec2,
137+
Core::LinAlg::SerialDenseVector& elevec3, std::shared_ptr<Core::Mat::Material> mat)
141138
{
142139
switch (action)
143140
{
@@ -191,18 +188,16 @@ int Discret::Elements::ArteryEleCalcLinExp<distype>::evaluate_service(Artery* el
191188
template <Core::FE::CellType distype>
192189
int Discret::Elements::ArteryEleCalcLinExp<distype>::scatra_evaluate(Artery* ele,
193190
Teuchos::ParameterList& params, Core::FE::Discretization& discretization, std::vector<int>& lm,
194-
Core::LinAlg::SerialDenseMatrix& elemat1_epetra,
195-
Core::LinAlg::SerialDenseMatrix& elemat2_epetra,
196-
Core::LinAlg::SerialDenseVector& elevec1_epetra,
197-
Core::LinAlg::SerialDenseVector& elevec2_epetra,
198-
Core::LinAlg::SerialDenseVector& elevec3_epetra, std::shared_ptr<Core::Mat::Material> mat)
191+
Core::LinAlg::SerialDenseMatrix& elemat1, Core::LinAlg::SerialDenseMatrix& elemat2,
192+
Core::LinAlg::SerialDenseVector& elevec1, Core::LinAlg::SerialDenseVector& elevec2,
193+
Core::LinAlg::SerialDenseVector& elevec3, std::shared_ptr<Core::Mat::Material> mat)
199194
{
200195
// the number of nodes
201196
const int numnode = my::iel_;
202197

203198
// construct views
204-
Core::LinAlg::Matrix<2 * my::iel_, 2 * my::iel_> elemat1(elemat1_epetra.values(), true);
205-
Core::LinAlg::Matrix<2 * my::iel_, 1> elevec1(elevec1_epetra.values(), true);
199+
Core::LinAlg::Matrix<2 * my::iel_, 2 * my::iel_> elemat_1(elemat1.values(), true);
200+
Core::LinAlg::Matrix<2 * my::iel_, 1> elevec_1(elevec1.values(), true);
206201
// elemat2, elevec2, and elevec3 are never used anyway
207202

208203
//----------------------------------------------------------------------
@@ -275,7 +270,7 @@ int Discret::Elements::ArteryEleCalcLinExp<distype>::scatra_evaluate(Artery* ele
275270
}
276271

277272
// call routine for calculating element matrix and right hand side
278-
scatra_sysmat(ele, escatran, ewfnp, ewbnp, eareanp, earean, elemat1, elevec1, *mat, dt);
273+
scatra_sysmat(ele, escatran, ewfnp, ewbnp, eareanp, earean, elemat_1, elevec_1, *mat, dt);
279274
return 0;
280275
}
281276

‎src/art_net/4C_art_net_artery_ele_calc_lin_exp.hpp‎

Lines changed: 9 additions & 15 deletions
Original file line numberDiff line numberDiff line change
@@ -49,29 +49,23 @@ namespace Discret
4949

5050
int evaluate(Artery* ele, Teuchos::ParameterList& params,
5151
Core::FE::Discretization& discretization, Core::Elements::LocationArray& la,
52-
Core::LinAlg::SerialDenseMatrix& elemat1_epetra,
53-
Core::LinAlg::SerialDenseMatrix& elemat2_epetra,
54-
Core::LinAlg::SerialDenseVector& elevec1_epetra,
55-
Core::LinAlg::SerialDenseVector& elevec2_epetra,
56-
Core::LinAlg::SerialDenseVector& elevec3_epetra,
52+
Core::LinAlg::SerialDenseMatrix& elemat1, Core::LinAlg::SerialDenseMatrix& elemat2,
53+
Core::LinAlg::SerialDenseVector& elevec1, Core::LinAlg::SerialDenseVector& elevec2,
54+
Core::LinAlg::SerialDenseVector& elevec3,
5755
std::shared_ptr<Core::Mat::Material> mat) override;
5856

5957
int scatra_evaluate(Artery* ele, Teuchos::ParameterList& params,
6058
Core::FE::Discretization& discretization, std::vector<int>& lm,
61-
Core::LinAlg::SerialDenseMatrix& elemat1_epetra,
62-
Core::LinAlg::SerialDenseMatrix& elemat2_epetra,
63-
Core::LinAlg::SerialDenseVector& elevec1_epetra,
64-
Core::LinAlg::SerialDenseVector& elevec2_epetra,
65-
Core::LinAlg::SerialDenseVector& elevec3_epetra,
59+
Core::LinAlg::SerialDenseMatrix& elemat1, Core::LinAlg::SerialDenseMatrix& elemat2,
60+
Core::LinAlg::SerialDenseVector& elevec1, Core::LinAlg::SerialDenseVector& elevec2,
61+
Core::LinAlg::SerialDenseVector& elevec3,
6662
std::shared_ptr<Core::Mat::Material> mat) override;
6763

6864
int evaluate_service(Artery* ele, const Arteries::Action action,
6965
Teuchos::ParameterList& params, Core::FE::Discretization& discretization,
70-
Core::Elements::LocationArray& la, Core::LinAlg::SerialDenseMatrix& elemat1_epetra,
71-
Core::LinAlg::SerialDenseMatrix& elemat2_epetra,
72-
Core::LinAlg::SerialDenseVector& elevec1_epetra,
73-
Core::LinAlg::SerialDenseVector& elevec2_epetra,
74-
Core::LinAlg::SerialDenseVector& elevec3_epetra,
66+
Core::Elements::LocationArray& la, Core::LinAlg::SerialDenseMatrix& elemat1,
67+
Core::LinAlg::SerialDenseMatrix& elemat2, Core::LinAlg::SerialDenseVector& elevec1,
68+
Core::LinAlg::SerialDenseVector& elevec2, Core::LinAlg::SerialDenseVector& elevec3,
7569
std::shared_ptr<Core::Mat::Material> mat) override;
7670

7771
/*!

‎src/art_net/4C_art_net_artery_ele_calc_pres_based.cpp‎

Lines changed: 14 additions & 19 deletions
Original file line numberDiff line numberDiff line change
@@ -57,23 +57,22 @@ Discret::Elements::ArteryEleCalcPresBased<distype>::instance(
5757
template <Core::FE::CellType distype>
5858
int Discret::Elements::ArteryEleCalcPresBased<distype>::evaluate(Artery* ele,
5959
Teuchos::ParameterList& params, Core::FE::Discretization& discretization,
60-
Core::Elements::LocationArray& la, Core::LinAlg::SerialDenseMatrix& elemat1_epetra,
61-
Core::LinAlg::SerialDenseMatrix& elemat2_epetra,
62-
Core::LinAlg::SerialDenseVector& elevec1_epetra,
63-
Core::LinAlg::SerialDenseVector& elevec2_epetra,
64-
Core::LinAlg::SerialDenseVector& elevec3_epetra, std::shared_ptr<Core::Mat::Material> mat)
60+
Core::Elements::LocationArray& la, Core::LinAlg::SerialDenseMatrix& elemat1,
61+
Core::LinAlg::SerialDenseMatrix& elemat2, Core::LinAlg::SerialDenseVector& elevec1,
62+
Core::LinAlg::SerialDenseVector& elevec2, Core::LinAlg::SerialDenseVector& elevec3,
63+
std::shared_ptr<Core::Mat::Material> mat)
6564
{
6665
// the number of nodes
6766
const int numnode = my::iel_;
6867

6968
// construct views
70-
Core::LinAlg::Matrix<numnode, numnode> elemat1(elemat1_epetra.values(), true);
71-
Core::LinAlg::Matrix<numnode, 1> elevec1(elevec1_epetra.values(), true);
69+
Core::LinAlg::Matrix<numnode, numnode> elemat_1(elemat1.values(), true);
70+
Core::LinAlg::Matrix<numnode, 1> elevec_1(elevec1.values(), true);
7271

7372
// ---------------------------------------------------------------------
7473
// call routine for calculating element matrix and right hand side
7574
// ---------------------------------------------------------------------
76-
sysmat(ele, discretization, la, elemat1, elevec1, mat);
75+
sysmat(ele, discretization, la, elemat_1, elevec_1, mat);
7776

7877
return 0;
7978
}
@@ -84,16 +83,14 @@ template <Core::FE::CellType distype>
8483
int Discret::Elements::ArteryEleCalcPresBased<distype>::evaluate_service(Artery* ele,
8584
const Arteries::Action action, Teuchos::ParameterList& params,
8685
Core::FE::Discretization& discretization, Core::Elements::LocationArray& la,
87-
Core::LinAlg::SerialDenseMatrix& elemat1_epetra,
88-
Core::LinAlg::SerialDenseMatrix& elemat2_epetra,
89-
Core::LinAlg::SerialDenseVector& elevec1_epetra,
90-
Core::LinAlg::SerialDenseVector& elevec2_epetra,
91-
Core::LinAlg::SerialDenseVector& elevec3_epetra, std::shared_ptr<Core::Mat::Material> mat)
86+
Core::LinAlg::SerialDenseMatrix& elemat1, Core::LinAlg::SerialDenseMatrix& elemat2,
87+
Core::LinAlg::SerialDenseVector& elevec1, Core::LinAlg::SerialDenseVector& elevec2,
88+
Core::LinAlg::SerialDenseVector& elevec3, std::shared_ptr<Core::Mat::Material> mat)
9289
{
9390
switch (action)
9491
{
9592
case Arteries::calc_flow_pressurebased:
96-
evaluate_flow(ele, discretization, la, elevec1_epetra, mat);
93+
evaluate_flow(ele, discretization, la, elevec1, mat);
9794
break;
9895
default:
9996
FOUR_C_THROW("Unknown type of action {} for Artery (PressureBased formulation)", action);
@@ -105,11 +102,9 @@ int Discret::Elements::ArteryEleCalcPresBased<distype>::evaluate_service(Artery*
105102
template <Core::FE::CellType distype>
106103
int Discret::Elements::ArteryEleCalcPresBased<distype>::scatra_evaluate(Artery* ele,
107104
Teuchos::ParameterList& params, Core::FE::Discretization& discretization, std::vector<int>& lm,
108-
Core::LinAlg::SerialDenseMatrix& elemat1_epetra,
109-
Core::LinAlg::SerialDenseMatrix& elemat2_epetra,
110-
Core::LinAlg::SerialDenseVector& elevec1_epetra,
111-
Core::LinAlg::SerialDenseVector& elevec2_epetra,
112-
Core::LinAlg::SerialDenseVector& elevec3_epetra, std::shared_ptr<Core::Mat::Material> mat)
105+
Core::LinAlg::SerialDenseMatrix& elemat1, Core::LinAlg::SerialDenseMatrix& elemat2,
106+
Core::LinAlg::SerialDenseVector& elevec1, Core::LinAlg::SerialDenseVector& elevec2,
107+
Core::LinAlg::SerialDenseVector& elevec3, std::shared_ptr<Core::Mat::Material> mat)
113108
{
114109
FOUR_C_THROW(
115110
"not implemented by pressure-based formulation, should be done by cloned "

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