Commit 204e37d
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- autoapi/torchtree
- distributions
- gar
- evolution/coalescent_simulator
- _modules
- torchtree
- cli
- core
- distributions
- evolution
- substitution_model
- inference
- hmc
- mcmc
- nf
- nn
- ops
- optim
- variational
- _sources/autoapi/torchtree
- distributions
- gar
- evolution/coalescent_simulator
- advanced
- autoapi/torchtree
- cli
- advi
- argparse_utils
- cli
- evolution
- hmc
- jacobians
- loggers
- map
- mcmc
- operators
- plugin_manager
- plugin
- priors
- utils
- core
- abstractparameter
- classproperty_decorator
- container
- identifiable
- logger
- model
- parameter_encoder
- parameter_utils
- parameter
- parametric
- runnable
- serializable
- utils
- distributions
- bayesian_bridge
- ctmc_scale
- deterministic_normal
- distributions
- gar
- gmrf_integrated
- gmrf
- inverse_gamma
- joint_distribution
- log_normal
- multivariate_normal
- normal
- one_on_x
- scale_mixture
- transforms
- tree_prior
- evolution
- alignment
- attribute_pattern
- bdsk
- birth_death
- branch_model
- coalescent_simulator
- coalescent
- datatype
- io
- poisson_tree_likelihood
- rate_transform
- root_transform
- site_model
- site_pattern
- substitution_model
- abstract
- amino_acid
- codon
- general
- nucleotide
- taxa
- tree_height_transform
- tree_likelihood
- tree_model_flexible
- tree_model
- tree_regression
- inference
- hmc
- adaptation
- hamiltonian
- hmc
- integrator
- operator
- stan_adaptation
- mcmc
- gmrf_block_updating
- mcmc
- operator
- sampler
- utils
- nf
- energy_functions
- flow
- planar
- realnvp
- nn
- module
- ops
- dual_averaging
- smooth
- welford
- optim
- convergence
- lr_scheduler
- optimizer
- torchtree
- typing
- variational
- chi
- kl
- renyi
- bibliography
- getting_started
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