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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

0.1.0 - 2026-01-08

Added

  • Initial repository setup
  • Extracted and organized catecholamine research repository structure
  • Added comprehensive documentation:
    • README.md with project overview and workflow
    • CONTRIBUTING.md with contribution guidelines
    • STRUCTURE.md with project organization details
    • LICENSE (MIT)
  • Added Python package configuration (pyproject.toml)
  • Added .gitignore for Python, data, and IDE files
  • Included core pipeline scripts:
    • validate_raw.py - Data validation
    • build_dataset.py - Dataset building
    • build_reports.py - Report generation
  • Included research protocol documentation
  • Included data schemas for validation
  • Included example datasets and metadata
  • Included paper template (Quarto)
  • Verified all dependencies install correctly
  • Verified all pipeline scripts run successfully

Repository Structure

  • data/ - Raw and derived datasets
  • scripts/ - Pipeline and utility scripts
  • src/catecholamine/ - Core Python package
  • paper/ - Manuscript and related files
  • protocol/ - Research methodologies
  • schemas/ - Data validation schemas
  • notebooks/ - Exploratory analysis
  • figures/ - Generated figures
  • reports/ - Generated reports
  • refs/ - Bibliography