Merge branch 'remove_cmor' of github.com:ACCESS-NRI/ACCESS-MOPPeR into remove_cmor

Author: rbeucher

.github/workflows/ci.yml

@@ -0,0 +1,70 @@
+name: CI
+
+on:
+  pull_request:
+    branches: [main]
+  push:
+    branches-ignore: [main]
+  workflow_dispatch:
+
+jobs:
+  pre-commit:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4.2.2
+      - uses: actions/setup-python@v5
+      - uses: pre-commit/action@v3.0.1
+
+  test:
+    name: Test (Python ${{ matrix.python-version }})
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: true
+      matrix:
+        python-version: ["3.11", "3.12", "3.13"]
+
+    steps:
+      - name: Checkout source
+        uses: actions/checkout@v4.2.2
+
+      - name: Setup conda environment
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          miniconda-version: "latest"
+          python-version: ${{ matrix.python-version }}
+          environment-file: ci/environment-${{ matrix.python-version }}.yml
+          activate-environment: access-nri-intake-test
+          auto-activate-base: false
+
+      - name: Install source
+        shell: bash -l {0}
+        run: python -m pip install .
+
+      - name: Create default config file
+        shell: bash -l {0}
+        run: |
+          mkdir -p ~/.mopper
+          cat <<EOF > ~/.mopper/user.yml
+          creator_name: "CI Bot"
+          organisation: "ACCESS-NRI"
+          creator_email: "ci@example.com"
+          creator_url: "https://example.com"
+          EOF
+
+      - name: List installed packages
+        shell: bash -l {0}
+        run: conda list
+
+      - name: Run tests
+        shell: bash -l {0}
+        run: coverage run -m --source=access_nri_intake pytest tests
+
+      - name: Generate coverage report
+        shell: bash -l {0}
+        run: coverage xml
+
+      - name: Upload code coverage
+        uses: codecov/codecov-action@v5
+        with:
+          token: ${{ secrets.codecov_token }}
+          files: ./coverage.xml

README.md

@@ -26,7 +26,7 @@ This rewrite retains key features of the original MOPPeR while enhancing usabili
 
 ## Usage
 ACCESS-MOPPeR v2.0.0a is best suited for users interested in evaluating outputs from ACCESS-ESM1.6 development releases. Full documentation is not available yet.
-Please refer to the [Getting Started Notebook](https://github.com/ACCESS-NRI/ACCESS-MOPPeR/blob/v2/notebooks/Getting_started.ipynb): 
+Please refer to the [Getting Started Notebook](https://github.com/ACCESS-NRI/ACCESS-MOPPeR/blob/v2/notebooks/Getting_started.ipynb):
 
 ## Future Development
 - **Optimized Multi-CPU Execution**: Parallel processing support will be introduced in later versions.

ci/environment-3.11.yml

@@ -0,0 +1,17 @@
+name: access-nri-mopper-test
+channels:
+  - conda-forge
+  - accessnri
+  - defaults
+dependencies:
+  - python==3.11
+  - xarray
+  - cmor
+  - numpy
+  - dask
+  - pyyaml
+  - cftime
+  - pip
+  - pip:
+    - codecov
+    - pytest-cov

ci/environment-3.12.yml

@@ -0,0 +1,17 @@
+name: access-nri-mopper-test
+channels:
+  - conda-forge
+  - accessnri
+  - defaults
+dependencies:
+  - python==3.12
+  - xarray
+  - cmor
+  - numpy
+  - dask
+  - pyyaml
+  - cftime
+  - pip
+  - pip:
+    - codecov
+    - pytest-cov

ci/environment-3.13.yml

@@ -0,0 +1,17 @@
+name: access-nri-mopper-test
+channels:
+  - conda-forge
+  - accessnri
+  - defaults
+dependencies:
+  - python==3.13
+  - xarray
+  - cmor
+  - numpy
+  - dask
+  - pyyaml
+  - cftime
+  - pip
+  - pip:
+    - codecov
+    - pytest-cov

src/access_mopper/ocean_supergrid.py

@@ -182,4 +182,4 @@ def extract_grid(self, grid_type: str):
             "longitude": lon,
             "vertices_latitude": lat_bnds,
             "vertices_longitude": lon_bnds,
-        }
+        }