Combine/pyproject.toml at main · AI-sandbox/Combine · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
[project]
name = "combine"
dynamic = ["version"]
authors = [
    { name="James Yang", email="jamesyang916@gmail.com" },
    { name="David Bonet", email="davidbonetsole@gmail.com" },
]
maintainers = [
    { name="James Yang", email="jamesyang916@gmail.com" },
    { name="David Bonet", email="davidbonetsole@gmail.com" },
]
classifiers = [
    "Intended Audience :: Science/Research",
    "Intended Audience :: Developers",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3 :: Only",
    "License :: OSI Approved :: MIT License",
    "Topic :: Software Development",
    "Topic :: Scientific/Engineering",
    "Typing :: Typed",
    "Operating System :: OS Independent",
]
description = "Combine tools"
license = {file = "LICENSE"}
keywords = ["snps", "GWAS", "PRS", "LAI"]
readme = "README.md"
requires-python = ">=3.9,<3.11"
dependencies = [
    "adelie",
    "numpy",
    "pandas",
    "Pgenlib",
    "tqdm",
]

[project.urls]
Homepage = "https://github.com/AI-sandbox/Combine"

[tool.poetry]
name = "combine"
version = "0.0.0"
description = "Combine"
authors = [
    "James Yang <jamesyang916@gmail.com>",
    "David Bonet <davidbonetsole@gmail.com>",
]

[tool.poetry.dependencies]
python = ">=3.9,<3.11"
numpy = "^1.24.2"
pandas = "^1.5.3"
tqdm = "^4.65.0"
adelie = "^1.1.49"
Pgenlib = "^0.91.0"
pybind11 = "^2.13.6"

[tool.poetry.group.test.dependencies]
pytest = "^7.2.1"

[tool.poetry.group.dev.dependencies]
pybind11 = "^2.11.1"
ipython = "^8.11.0"
nbformat = "^5.7.3"
jupyter = "^1.0.0"
jupytext = "^1.14.5"

[tool.jupytext]
notebook_metadata_filter = "-all"
cell_metadata_filter = "-all"

[build-system]
requires = [
    "setuptools",
    "pybind11",
]
build-backend = "setuptools.build_meta"

[tool.setuptools_scm]

[tool.pytest.ini_options]
filterwarnings = [
    "ignore::pyparsing.PyparsingDeprecationWarning",
]