Move amici.petab to amici.importers.petab #373
Workflow file for this run
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| name: SBML JAX | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - 'release*' | |
| pull_request: | |
| paths: | |
| - .github/workflows/test_sbml_semantic_test_suite_jax.yml | |
| - python/sdist/amici/jax/** | |
| - scripts/run-SBMLTestsuite.sh | |
| - tests/sbml/testSBMLSuiteJax.py | |
| - tests/sbml/conftest.py | |
| check_suite: | |
| types: [requested] | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| name: SBML Semantic Test Suite JAX | |
| runs-on: ubuntu-24.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| cases: ["1-600", "601-1200", "1200-"] | |
| python-version: [ "3.13" ] | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v5 | |
| with: | |
| fetch-depth: 1 | |
| - name: Install apt dependencies | |
| uses: ./.github/actions/install-apt-dependencies | |
| - run: AMICI_PARALLEL_COMPILE="" ./scripts/installAmiciSource.sh | |
| - run: ./scripts/run-SBMLTestsuite.sh --jax ${{ matrix.cases }} | |
| - name: "Upload artifact: SBML semantic test suite results" | |
| uses: actions/upload-artifact@v5 | |
| with: | |
| name: amici-semantic-results-jax-${{ matrix.cases }} | |
| path: tests/sbml/amici-semantic-results-jax | |
| - name: Codecov SBMLSuiteJax | |
| if: (github.event_name == 'pull_request' || github.repository_owner == 'AMICI-dev') && github.actor != 'dependabot[bot]' | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: coverage_SBMLSuite_jax.xml | |
| flags: sbmlsuite-jax | |
| fail_ci_if_error: true |