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2 | 2 |
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3 | 3 | ## v0.X Series |
4 | 4 |
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| 5 | +### v0.19.0 (2023-08-26) |
| 6 | + |
| 7 | +**Features** |
| 8 | +* SBML import now supports `rateOf` |
| 9 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2120 |
| 10 | +* Added `Model.{get,set}SteadyStateComputationMode` (analogous to `SteadyStateSensitivityMode`) |
| 11 | + which allows to choose how steady state is computed. |
| 12 | + by @plakrisenko in https://github.com/AMICI-dev/AMICI/pull/2074 |
| 13 | + |
| 14 | + **Note: The default `SteadyStateSensitivityMode` changed from `newtonOnly` to `integrateIfNewtonFails`.** |
| 15 | + |
| 16 | +* SBML import: Allow hardcoding of numerical values |
| 17 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2134 |
| 18 | +* Added `antimony2amici` for more convenient antimony import |
| 19 | + (simplifies working with raw ODEs, see documentation) |
| 20 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2142 |
| 21 | +* Added `AMICI_TRY_ENABLE_HDF5` environment variable to control whether to search for HDF5 or not |
| 22 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2148 |
| 23 | + |
| 24 | +**Fixes** |
| 25 | + |
| 26 | +* Fixed SBML import for events with trigger functions depending on parameters that are initial |
| 27 | + assignment targets |
| 28 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2145 |
| 29 | +* Fixed SBML import for event-assigned parameters with non-float initial assignments |
| 30 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2156 |
| 31 | +* Fixed `unistd.h` dependency of `hdf5.cpp` that led to compilation |
| 32 | + failures on Windows |
| 33 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2154 |
| 34 | +* Set CMake policies for cmake 3.27 by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2162 |
| 35 | +* Fixed a `lib/` vs `lib64/` issue, leading to `SUNDIALSConfig.cmake`-not-found issues |
| 36 | + on some systems |
| 37 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2165 |
| 38 | +* CMake: fixed scope of `-DHAS_BOOST_CHRONO` which may have lead to a mix of |
| 39 | + `boost::chrono::thread_clock` and `std::clock` being used in programs using amici, |
| 40 | + and potentially segmentation faults |
| 41 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2163 |
| 42 | + |
| 43 | +Performance: |
| 44 | +* Combined code for sparse model functions and their index files for slightly faster |
| 45 | + compilation of small models |
| 46 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2159 |
| 47 | + |
| 48 | +* Removed complex / complex long KLU functions for slightly faster amici package installation |
| 49 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2160 |
| 50 | + |
| 51 | +**Full Changelog**: https://github.com/AMICI-dev/AMICI/compare/v0.18.1...v0.19.0 |
| 52 | + |
| 53 | + |
5 | 54 | ### v0.18.1 (2023-06-26) |
6 | 55 |
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7 | 56 | Fixes: |
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