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2 | 2 |
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3 | 3 | ## v0.X Series |
4 | 4 |
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| 5 | +### v0.17.0 (2023-05-09) |
| 6 | + |
| 7 | +AMICI v0.17.0 requires Python>=3.9 and a C++17 compatible compiler |
| 8 | + |
| 9 | +Features |
| 10 | +* DAE support in SBML |
| 11 | + by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/2017 |
| 12 | +* SBML import: flatten SBML-comp models |
| 13 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2063 |
| 14 | +* Added sllh computation back to `petab_objective.simulate_petab` |
| 15 | + by @dilpath in https://github.com/AMICI-dev/AMICI/pull/1548 |
| 16 | +* CMake-based Python extension builds |
| 17 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1992 |
| 18 | + |
| 19 | +Fixes |
| 20 | +* Fixed CPU time tracking with multi-threading (partially) |
| 21 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2023 |
| 22 | +* Fixed HDF5 ambiguous overload |
| 23 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2031 |
| 24 | +* Fixed varying cmake libdir lib(64)/ |
| 25 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2033 |
| 26 | +* Fixed Equilibration cpu time computation |
| 27 | + by @plakrisenko in https://github.com/AMICI-dev/AMICI/pull/2035 |
| 28 | +* CMake: add header files to library sources for generated models |
| 29 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2047 |
| 30 | +* CMake: Handle header-dependency of swig files |
| 31 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2046 |
| 32 | +* Don't try to detect conservation laws for models with Species-AssignmentRules |
| 33 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2056 |
| 34 | +* Smith benchmark and SBML initialization fix |
| 35 | + by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/2034 |
| 36 | +* SBML import: Fixed check for required packages |
| 37 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2064 |
| 38 | +* Nan observables |
| 39 | + by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/2065 |
| 40 | +* Fixed check for discontinuities for conservation law computation |
| 41 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2068 |
| 42 | +* Specify visualization dependencies |
| 43 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2070 |
| 44 | +* Fixed sympy symbol name clashes during PEtab import |
| 45 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2069 |
| 46 | +* Fixed ReturnData::{preeq_wrms,posteq_wrms} with FSA and check_sensi_steadystate_conv_=True |
| 47 | + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2071 |
| 48 | + |
| 49 | +Extended / updated documentation, for example: |
| 50 | +* Jax example notebook |
| 51 | + by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/1996 |
| 52 | +* Updated Windows/MSVC installation instructions |
| 53 | + by @Podde1 in https://github.com/AMICI-dev/AMICI/pull/2053 |
| 54 | + |
| 55 | +New Contributors |
| 56 | +* @Podde1 made their first contribution in https://github.com/AMICI-dev/AMICI/pull/2053 |
| 57 | + |
| 58 | +**Full Changelog**: https://github.com/AMICI-dev/AMICI/compare/v0.16.1...v0.17.0 |
| 59 | + |
| 60 | + |
5 | 61 | ### v0.16.1 (2023-02-24) |
6 | 62 |
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7 | 63 | Fixes: |
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