add codespell action

Author: zingale

.codespell-ignore-words

@@ -0,0 +1,16 @@
+blocs
+bloc
+inout
+als
+truns
+pres
+dum
+fom
+fromm
+thi
+nd
+ue
+bion
+aas
+checkin
+indx

.codespellrc

@@ -0,0 +1,5 @@
+[codespell]
+skip = .git,*.ipynb,*.bib,*.ps
+ignore-words = .codespell-ignore-words
+
+

.github/workflows/codespell.yml

@@ -0,0 +1,26 @@
+name: codespell
+
+on: [push, pull_request]
+
+jobs:
+  codespell:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Setup Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.10'
+          cache: "pip"
+
+      - name: Install dependencies
+        run: pip install -r ./requirements.txt
+
+      - name: Run codespell
+        run: |
+          codespell
+

job_scripts/summit/run_amrex_gpu_tutorials.summit

@@ -73,7 +73,7 @@ SMPIARGS+=" --smpiargs="-x PAMI_DISABLE_CUDA_HOOK=1 -disable_gpu_hooks""
 # Reserves memory for storing profiling data for non-CDP operations for each buffer on a
 #       context. The default value is 8MB. 
 # Ensures sufficient memory so that profiling information written to stdout is reported
-#       in cases wher HBM is over-subscribed (large memory problems).
+#       in cases where HBM is over-subscribed (large memory problems).
 
 # Example run lines
 # =====================

job_scripts/summit/summit_template.sh

@@ -21,7 +21,7 @@ INPUTS=inputs_luna
 n_res=480                # The max allocated number of resource sets is
 n_cpu_cores_per_res=1    # nnodes * n_max_res_per_node. In this case we will
 n_mpi_per_res=1          # use all the allocated resource sets to run the job below,
-n_gpu_per_res=1          # however we can define more enviroment variables to allocate two jobs
+n_gpu_per_res=1          # however we can define more environment variables to allocate two jobs
 n_max_res_per_node=6     # simultaneous jobs, where n_res = n_res_1 + n_res2 allocates for two jobs.
 
 function find_chk_file {

requirements.txt

@@ -5,3 +5,5 @@ numpydoc
 more_itertools
 sphinx-prompt
 sphinx-copybutton
+
+codespell

wdmerger/run_utils.sh

@@ -434,7 +434,7 @@ function get_remaining_walltime {
 
   elif [ $batch_system == "SLURM" ]; then
 
-      # For SLURM we need to subtract the run time from the total alloted time.
+      # For SLURM we need to subtract the run time from the total allotted time.
 
       total_time=$(squeue -l -u $USER | grep $job_number | awk '{ print $7 }')
       total_time=$(hours_to_seconds $total_time)