Common Config

The Common_Config file holds variables that are used by multiple methods in ANGSD-wrapper:

Variable	Function
GROUP_SAMPLES	A list of samples to be used in calculations
GROUP_INBREEDING	A list of inbreeding coefficients, where each line here corresponds to a line in GROUP_SAMPLES
ANC_SEQ	Path to ancestral sequence
REF_SEQ	Path to reference sequence
PROJECT	Name given to all outputs in ANGSD-wrapper
SCRATCH	Place to store files, the full path is SCRATCH/PROJECT/<name of method>
REGIONS	Limit the scope of ANGSD-wrapper to certain regions