Py310 sub #526
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: tests | |
| on: | |
| push: | |
| branches: ["**"] | |
| pull_request: | |
| types: [opened, reopened, ready_for_review] | |
| jobs: | |
| pytest-unit: | |
| runs-on: ubuntu-24.04 | |
| env: | |
| ENV: test | |
| DGLBACKEND: pytorch | |
| strategy: | |
| matrix: | |
| python-version: ["3.10"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/python-uv-setup | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| debug: "true" | |
| - name: pytest | |
| shell: bash | |
| run: | | |
| . .venv/bin/activate | |
| cd atomsci/modac/test/unit && python -m pytest --capture=sys --capture=fd --cov=atomsci/ -vv | |
| cd ../../../../atomsci/ddm/test/unit && python -m pytest -m "not moe_required" -n 2 --capture=sys --capture=fd --cov=atomsci -vv | |
| - name: Save coverage | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-pytest-unit | |
| path: | | |
| atomsci/ddm/test/unit/.coverage* | |
| atomsci/modac/test/unit/.coverage* | |
| include-hidden-files: true | |
| if-no-files-found: error | |
| pytest-integrative: | |
| runs-on: ubuntu-24.04 | |
| env: | |
| ENV: test | |
| DGLBACKEND: pytorch | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10"] | |
| chunk: [0, 1, 2, 3] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/python-uv-setup | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| debug: "false" | |
| - name: Debug - dgl + torchdata + shadowing | |
| shell: bash | |
| run: | | |
| . .venv/bin/activate | |
| set -x | |
| which python | |
| python -V | |
| python -c "import sys, os; print('sys.executable:', sys.executable); print('sys.path[0]:', sys.path[0]); print('cwd:', os.getcwd())" | |
| python -c "import importlib.util; spec = importlib.util.find_spec('torchdata'); print('torchdata spec:', spec); print('torchdata origin:', getattr(spec,'origin',None)); print('torchdata submodule locations:', getattr(spec,'submodule_search_locations',None))" | |
| python -c "import torchdata; print('torchdata file:', torchdata.__file__); print('torchdata version:', getattr(torchdata,'__version__','no __version__'))" | |
| python -c "import torchdata.datapipes.iter as it; print('torchdata.datapipes.iter OK:', it)" | |
| python -c "import dgl; print('dgl OK:', dgl.__version__)" | |
| python -m pip --version | |
| python -m pip show torch torchdata dgl dgllife || true | |
| python -m pip freeze | grep -E '^(torch|torchdata|dgl|dgllife|numpy)=' || true | |
| - name: pytest | |
| shell: bash | |
| run: | | |
| . .venv/bin/activate | |
| cd atomsci/ddm/test/integrative | |
| ./integrative_batch_chunk_tests ${{ matrix.chunk }} | |
| - name: Save coverage | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-pytest-integrative-${{ matrix.chunk }} | |
| path: atomsci/ddm/test/integrative/**/.coverage* | |
| include-hidden-files: true | |
| if-no-files-found: error | |
| coverage-merge: | |
| runs-on: ubuntu-24.04 | |
| needs: [pytest-unit, pytest-integrative] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Install coverage | |
| shell: bash | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install coverage | |
| - name: Download all coverage artifacts | |
| uses: actions/download-artifact@v5 | |
| with: | |
| path: coverage-reports | |
| - name: Merge coverage reports | |
| run: | | |
| # List directory structure for debugging | |
| set -euo pipefail | |
| ls -la coverage-reports || true | |
| # Find and combine all coverage files | |
| find coverage-reports -name ".coverage*" -type f -print | |
| # Combine all coverage files | |
| find coverage-reports -name ".coverage*" -type f -print0 | xargs -0 coverage combine | |
| # Generate XML report for codecov | |
| coverage xml | |
| - name: Upload merged coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| files: ./coverage.xml | |
| flags: unittests | |
| name: codecov-umbrella | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |