fix a bug in PrecisionProDB_Sqlite

two main functions

Author: ATPs

src/PrecisionProDB.py

@@ -144,7 +144,7 @@ def main():
         # use Sqlite
         import PrecisionProDB_Sqlite
         print('using sqlite database to speed up')
-        PrecisionProDB_Sqlite.main(file_genome, file_gtf, file_mutations, file_protein, threads, outprefix, datatype, protein_keyword, filter_PASS, individual, chromosome_only, keep_all, file_sqlite)
+        PrecisionProDB_Sqlite.main_PrecsionProDB_Sqlite(file_genome, file_gtf, file_mutations, file_protein, threads, outprefix, datatype, protein_keyword, filter_PASS, individual, chromosome_only, keep_all, file_sqlite)
 
     pattern = re.compile(r'(chr)?(\d+)-(\d+)-([A-Za-z]+)-([A-Za-z]+)')
     match = pattern.match(file_mutations)

src/PrecisionProDB_Sqlite.py

@@ -305,7 +305,7 @@ def check_sqlite_file(file_path):
         if 'conn' in locals():
             conn.close()
 
-def main(file_genome, file_gtf, file_mutations, file_protein, threads, outprefix, datatype, protein_keyword, filter_PASS, individual, chromosome_only, keep_all, file_sqlite):
+def main_PrecsionProDB_Sqlite(file_genome, file_gtf, file_mutations, file_protein, threads, outprefix, datatype, protein_keyword, filter_PASS, individual, chromosome_only, keep_all, file_sqlite):
 
     if os.path.exists(file_sqlite):
         if not check_sqlite_file(file_sqlite):