Create setup.py

Author: ATPs

setup.py

@@ -0,0 +1,40 @@
+from setuptools import setup, find_packages
+import os
+folder = os.path.dirname(os.path.abspath(__file__))
+setup(
+    name="precisionprodb",  # Your package name
+    version="2.0.2",  # Package version
+    # packages=['.',],  # Automatically find sub-packages under `src`
+    package_dir={'': 'src'},
+    install_requires=[  # Your dependencies
+        'biopython>=1.78',
+        'pandas>=1.0.5',
+        'numpy>=1.18.5',
+    ],
+    entry_points={  # Define terminal commands for each script
+        'console_scripts': [
+            'buildSqlite=buildSqlite:main',  # Assuming `main()` is defined in buildSqlite.py
+            'downloadHuman=downloadHuman:main',
+            'extractMutatedUniprot=extractMutatedUniprot:main',
+            'generatePEFFoutput=generatePEFFoutput:main',
+            'perChrom=perChrom:main',
+            'perChromSqlite=perChromSqlite:main',
+            'PrecisionProDB=PrecisionProDB:main',
+            'PrecisionProDB_core=PrecisionProDB_core:main',
+            'PrecisionProDB_Sqlite=PrecisionProDB_Sqlite:main',
+            'PrecisionProDB_test=PrecisionProDB_test:main',
+            'PrecisionProDB_vcf=PrecisionProDB_vcf:main',
+            'vcf2mutation=vcf2mutation:main',
+        ],
+    },
+    long_description=open(folder +'/README.md').read(),  # Read the README as long description
+    long_description_content_type='text/markdown',
+    author="Xiaolong Cao",
+    author_email="[email protected]",
+    url="https://github.com/ATPs/PrecisonProDB",
+    classifiers=[
+        'Programming Language :: Python :: 3',
+        'License :: OSI Approved :: GNU General Public License v3.0',  # Adjust to your license
+        'Operating System :: OS Independent',
+    ],
+)