Update package dependencies.

Signed-off-by: Thomas Mansencal <[email protected]>

Author: KelSolaar

docs/requirements.txt

@@ -2,31 +2,31 @@
 #    uv export --no-hashes --all-extras --no-dev
 accessible-pygments==0.0.5
 alabaster==1.0.0
-babel==2.16.0
-beautifulsoup4==4.12.3
-certifi==2024.8.30
-charset-normalizer==3.4.0
+babel==2.17.0
+beautifulsoup4==4.13.3
+certifi==2025.1.31
+charset-normalizer==3.4.1
 colorama==0.4.6 ; sys_platform == 'win32'
 colour-science==0.4.6
 docutils==0.21.2
 idna==3.10
-imageio==2.36.0
+imageio==2.37.0
 imagesize==1.4.1
-jinja2==3.1.4
-jsonpickle==2.2.0
+jinja2==3.1.6
+jsonpickle==4.0.2
 markupsafe==3.0.2
 networkx==3.4.2
-numpy==2.1.3
-opencolorio==2.4.0
+numpy==2.2.3
+opencolorio==2.4.1
 packaging==24.2
-pillow==11.0.0
-pydata-sphinx-theme==0.16.0
-pydot==3.0.2
-pygments==2.18.0
-pyparsing==3.2.0
+pillow==11.1.0
+pydata-sphinx-theme==0.16.1
+pydot==3.0.4
+pygments==2.19.1
+pyparsing==3.2.1
 requests==2.32.3
-scipy==1.14.1
-semver==3.0.2
+scipy==1.15.2
+semver==3.0.4
 snowballstemmer==2.2.0
 soupsieve==2.6
 sphinx==8.1.3
@@ -36,6 +36,6 @@ sphinxcontrib-htmlhelp==2.1.0
 sphinxcontrib-jsmath==1.0.1
 sphinxcontrib-qthelp==2.0.0
 sphinxcontrib-serializinghtml==2.0.0
-tomli==2.1.0 ; python_full_version < '3.11'
+tomli==2.2.1 ; python_full_version < '3.11'
 typing-extensions==4.12.2
-urllib3==2.2.3
+urllib3==2.3.0

pyproject.toml

@@ -48,7 +48,7 @@ dependencies = [
 
 [project.optional-dependencies]
 optional = [
-    "colour-science>=0.4.3",
+    "colour-science>=0.4.6",
     "jsonpickle",
     "networkx",
     "pydot",

requirements.txt

@@ -2,147 +2,79 @@
 #    uv export --no-hashes --all-extras
 accessible-pygments==0.0.5
 alabaster==1.0.0
-anyio==4.6.2.post1
-appnope==0.1.4 ; platform_system == 'Darwin'
-argon2-cffi==23.1.0
-argon2-cffi-bindings==21.2.0
-arrow==1.3.0
-asttokens==2.4.1
-async-lru==2.0.4
-attrs==24.2.0
-babel==2.16.0
+anyio==4.8.0
+babel==2.17.0
 backports-tarfile==1.2.0 ; python_full_version < '3.12'
-beautifulsoup4==4.12.3
-bleach==6.2.0
-certifi==2024.8.30
-cffi==1.17.1
+beautifulsoup4==4.13.3
+certifi==2025.1.31
+cffi==1.17.1 ; platform_python_implementation == 'PyPy' or sys_platform == 'linux'
 cfgv==3.4.0
-charset-normalizer==3.4.0
-click==8.1.7
-colorama==0.4.6 ; sys_platform == 'win32' or platform_system == 'Windows'
+charset-normalizer==3.4.1
+click==8.1.8
+colorama==0.4.6 ; sys_platform == 'win32'
 colour-science==0.4.6
-comm==0.2.2
-coverage==7.6.7
+coverage==7.6.12
 coveralls==4.0.1
-cryptography==43.0.3 ; sys_platform == 'linux'
-debugpy==1.8.8
-decorator==5.1.1
-defusedxml==0.7.1
+cryptography==44.0.2 ; sys_platform == 'linux'
 distlib==0.3.9
 docopt==0.6.2
 docutils==0.21.2
 exceptiongroup==1.2.2 ; python_full_version < '3.11'
 execnet==2.1.1
-executing==2.1.0
-fastjsonschema==2.20.0
-filelock==3.16.1
-fqdn==1.5.1
+filelock==3.18.0
 h11==0.14.0
-hatch==1.13.0
-hatchling==1.26.3
+hatch==1.14.0
+hatchling==1.27.0
 httpcore==1.0.7
-httpx==0.27.2
+httpx==0.28.1
 hyperlink==21.0.0
-identify==2.6.2
+identify==2.6.9
 idna==3.10
-imageio==2.36.0
+imageio==2.37.0
 imagesize==1.4.1
-importlib-metadata==8.5.0
+importlib-metadata==8.6.1 ; python_full_version < '3.12'
 iniconfig==2.0.0
 invoke==2.2.0
-ipykernel==6.29.5
-ipython==8.29.0
-ipywidgets==8.1.5
-isoduration==20.11.0
 jaraco-classes==3.4.0
 jaraco-context==6.0.1
 jaraco-functools==4.1.0
-jedi==0.19.2
-jeepney==0.8.0 ; sys_platform == 'linux'
-jinja2==3.1.4
-json5==0.9.28
-jsonpickle==2.2.0
-jsonpointer==3.0.0
-jsonschema==4.23.0
-jsonschema-specifications==2024.10.1
-jupyter==1.1.1
-jupyter-client==8.6.3
-jupyter-console==6.6.3
-jupyter-core==5.7.2
-jupyter-events==0.10.0
-jupyter-lsp==2.2.5
-jupyter-server==2.14.2
-jupyter-server-terminals==0.5.3
-jupyterlab==4.3.1
-jupyterlab-pygments==0.3.0
-jupyterlab-server==2.27.3
-jupyterlab-widgets==3.0.13
-keyring==25.5.0
+jeepney==0.9.0 ; sys_platform == 'linux'
+jinja2==3.1.6
+jsonpickle==4.0.2
+keyring==25.6.0
 markdown-it-py==3.0.0
 markupsafe==3.0.2
-matplotlib-inline==0.1.7
 mdurl==0.1.2
-mistune==3.0.2
-more-itertools==10.5.0
-nbclient==0.10.0
-nbconvert==7.16.4
-nbformat==5.10.4
-nest-asyncio==1.6.0
+more-itertools==10.6.0
 networkx==3.4.2
-nh3==0.2.18
 nodeenv==1.9.1
-notebook==7.0.7
-notebook-shim==0.2.4
-numpy==2.1.3
-opencolorio==2.4.0
-overrides==7.7.0
+numpy==2.2.3
+opencolorio==2.4.1
 packaging==24.2
-pandocfilters==1.5.1
-parso==0.8.4
 pathspec==0.12.1
 pexpect==4.9.0
-pillow==11.0.0
-pkginfo==1.10.0
+pillow==11.1.0
 platformdirs==4.3.6
 pluggy==1.5.0
-pre-commit==4.0.1
-prometheus-client==0.21.0
-prompt-toolkit==3.0.48
-psutil==6.1.0
+pre-commit==4.1.0
 ptyprocess==0.7.0
-pure-eval==0.2.3
-pycparser==2.22
-pydata-sphinx-theme==0.16.0
-pydot==3.0.2
-pygments==2.18.0
-pyparsing==3.2.0
-pyright==1.1.389
-pytest==8.3.3
+pycparser==2.22 ; platform_python_implementation == 'PyPy' or sys_platform == 'linux'
+pydata-sphinx-theme==0.16.1
+pydot==3.0.4
+pygments==2.19.1
+pyparsing==3.2.1
+pyright==1.1.396
+pytest==8.3.5
 pytest-cov==6.0.0
 pytest-xdist==3.6.1
-python-dateutil==2.9.0.post0
-python-json-logger==2.0.7
-pywin32==308 ; platform_python_implementation != 'PyPy' and sys_platform == 'win32'
 pywin32-ctypes==0.2.3 ; sys_platform == 'win32'
-pywinpty==2.0.14 ; os_name == 'nt'
 pyyaml==6.0.2
-pyzmq==26.2.0
-readme-renderer==44.0
-referencing==0.35.1
 requests==2.32.3
-requests-toolbelt==1.0.0
-rfc3339-validator==0.1.4
-rfc3986==2.0.0
-rfc3986-validator==0.1.1
 rich==13.9.4
-rpds-py==0.21.0
-scipy==1.14.1
+scipy==1.15.2
 secretstorage==3.3.3 ; sys_platform == 'linux'
-semver==3.0.2
-send2trash==1.8.3
-setuptools==75.6.0
+semver==3.0.4
 shellingham==1.5.4
-six==1.16.0
 sniffio==1.3.1
 snowballstemmer==2.2.0
 soupsieve==2.6
@@ -153,28 +85,14 @@ sphinxcontrib-htmlhelp==2.1.0
 sphinxcontrib-jsmath==1.0.1
 sphinxcontrib-qthelp==2.0.0
 sphinxcontrib-serializinghtml==2.0.0
-stack-data==0.6.3
-terminado==0.18.1
-tinycss2==1.4.0
-toml==0.10.2
-tomli==2.1.0 ; python_full_version <= '3.11'
-tomli-w==1.1.0
+tomli==2.2.1 ; python_full_version <= '3.11'
+tomli-w==1.2.0
 tomlkit==0.13.2
-tornado==6.4.1
-traitlets==5.14.3
-trove-classifiers==2024.10.21.16
-twine==5.1.1
-types-python-dateutil==2.9.0.20241003
+trove-classifiers==2025.3.13.13
 typing-extensions==4.12.2
-uri-template==1.3.0
-urllib3==2.2.3
+urllib3==2.3.0
 userpath==1.9.2
-uv==0.5.4
-virtualenv==20.27.1
-wcwidth==0.2.13
-webcolors==24.11.1
-webencodings==0.5.1
-websocket-client==1.8.0
-widgetsnbextension==4.0.13
-zipp==3.21.0
+uv==0.6.6
+virtualenv==20.29.3
+zipp==3.21.0 ; python_full_version < '3.12'
 zstandard==0.23.0