🚀 Deploy updated FM site (2026-01-14 11:05)

Author: blengerich

fm-spring-2026/project/index.html

@@ -89,9 +89,7 @@ <h1 class="post-title">Course Project</h1>
     <h2 class="post-description">Guidelines and deliverables for the shared course review paper</h2>
   </header>
 
-  <article class="post-content Course Project clearfix"><h2 id="course-project-overview">Course Project Overview</h2>
-
-<p>This course has <strong>one project</strong>: a <strong>single, collaboratively written review paper</strong> on <em>Foundation Models for Biomedical Data</em>.</p>
+  <article class="post-content Course Project clearfix"><p>This course has <strong>one project</strong>: a <strong>single, collaboratively written review paper</strong> on <em>Foundation Models for Biomedical Data</em>.</p>
 
 <p>There are <strong>no separate teams and no independent projects</strong>. All enrolled students are collaborators on the same paper, which will be written incrementally throughout the semester using <strong>Manubot on GitHub</strong>.</p>
 
@@ -107,7 +105,7 @@ <h2 class="post-description">Guidelines and deliverables for the shared course r
 
 <hr />
 
-<h2 id="writing-platform-and-infrastructure">Writing Platform and Infrastructure</h2>
+<h3 id="writing-platform-and-infrastructure">Writing Platform and Infrastructure</h3>
 
 <ul>
   <li>The paper will be written using Manubot.</li>
@@ -119,7 +117,7 @@ <h2 id="writing-platform-and-infrastructure">Writing Platform and Infrastructure
 
 <hr />
 
-<h2 id="paper-scope-and-outline">Paper Scope and Outline</h2>
+<h3 id="paper-scope-and-outline">Paper Scope and Outline</h3>
 
 <p>The paper follows a shared outline agreed upon by the class:</p>
 
@@ -137,7 +135,7 @@ <h2 id="paper-scope-and-outline">Paper Scope and Outline</h2>
 
 <hr />
 
-<h2 id="how-the-paper-is-built-important">How the Paper Is Built (Important)</h2>
+<h3 id="how-the-paper-is-built-important">How the Paper Is Built (Important)</h3>
 
 <p>The paper is developed <strong>through normal class activity</strong>, not through separate project checkpoints.</p>
 
@@ -154,13 +152,13 @@ <h2 id="how-the-paper-is-built-important">How the Paper Is Built (Important)</h2
 
 <hr />
 
-<h2 id="project-milestones">Project Milestones</h2>
+<h3 id="project-milestones">Project Milestones</h3>
 
 <p>Dates will be announced in class. These milestones are shared by the whole class.</p>
 
-<hr />
+<p>Roughly, we will have:</p>
 
-<h3 id="section-ownership-and-outline-early-semester">Section Ownership and Outline (Early Semester)</h3>
+<h4 id="section-ownership-and-outline-early-semester">Section Ownership and Outline (Early Semester)</h4>
 
 <p>Each student will:</p>
 <ul>
@@ -171,9 +169,7 @@ <h3 id="section-ownership-and-outline-early-semester">Section Ownership and Outl
 
 <p>This establishes responsibility while leaving room for refinement.</p>
 
-<hr />
-
-<h3 id="section-drafts-mid-semester">Section Drafts (Mid-Semester)</h3>
+<h4 id="section-drafts-mid-semester">Section Drafts (Mid-Semester)</h4>
 
 <p>Each student will produce a <strong>substantive draft</strong> of their owned section.</p>
 
@@ -189,31 +185,7 @@ <h3 id="section-drafts-mid-semester">Section Drafts (Mid-Semester)</h3>
 
 <p>Drafts are expected to change significantly after feedback.</p>
 
-<hr />
-
-<h3 id="paper-driven-presentations-ongoing">Paper-Driven Presentations (Ongoing)</h3>
-
-<p>There are <strong>no formal project presentations</strong>.</p>
-
-<p>Instead, students regularly:</p>
-<ul>
-  <li>Present assigned papers or paper clusters</li>
-  <li>Use presentations to motivate discussion relevant to one part of the review</li>
-  <li>Help surface assumptions, limitations, and points of comparison</li>
-</ul>
-
-<p>These presentations are:</p>
-<ul>
-  <li>Short and informal</li>
-  <li>Integrated into regular class meetings</li>
-  <li>Evaluated as part of <strong>presentation quality and participation</strong>, not as a separate deliverable</li>
-</ul>
-
-<p>Their purpose is to <strong>develop the paper through discussion</strong>, not to rehearse conference talks.</p>
-
-<hr />
-
-<h3 id="final-revised-paper-end-of-semester">Final Revised Paper (End of Semester)</h3>
+<h4 id="final-revised-paper-end-of-semester">Final Revised Paper (End of Semester)</h4>
 
 <p>The final deliverable is the <strong>entire revised paper</strong>, incorporating:</p>
 <ul>
@@ -231,7 +203,7 @@ <h3 id="final-revised-paper-end-of-semester">Final Revised Paper (End of Semeste
 
 <hr />
 
-<h2 id="evaluation-philosophy">Evaluation Philosophy</h2>
+<h3 id="evaluation-philosophy">Evaluation Philosophy</h3>
 
 <p>This project is evaluated holistically.</p>
 
@@ -247,7 +219,7 @@ <h2 id="evaluation-philosophy">Evaluation Philosophy</h2>
 
 <hr />
 
-<h2 id="authorship-and-public-release">Authorship and Public Release</h2>
+<h3 id="authorship-and-public-release">Authorship and Public Release</h3>
 
 <p>The paper is intended to be <strong>public-facing</strong>.</p>
 
@@ -256,20 +228,6 @@ <h2 id="authorship-and-public-release">Authorship and Public Release</h2>
   <li>Authorship order and naming conventions will be discussed transparently.</li>
   <li>Students may opt out of public attribution if desired.</li>
 </ul>
-
-<hr />
-
-<h2 id="what-this-project-is-not">What This Project Is <em>Not</em></h2>
-
-<ul>
-  <li>Not a traditional implementation project</li>
-  <li>Not a set of independent mini-papers</li>
-  <li>Not something written at the end of the semester</li>
-</ul>
-
-<p>If you are unsure how a contribution fits into the shared paper, ask early.</p>
-
-<p>This project works only if everyone treats it as a <strong>real collaborative research effort</strong>.</p>
 </article>
 </div>
 </div>