updated EPM notebook

Author: yeshaokai

amadeusgpt/managers/gui_manager.py

@@ -11,6 +11,7 @@
                                               register_core_api)
 
 from .base import Manager
+from amadeusgpt.analysis_objects.object import ROIObject
 from .object_manager import ObjectManager
 
 
@@ -50,9 +51,9 @@ def onselect(self, vertices):
 
         # Here you can add any further processing of the polygons
         self.object_manager.roi_objects = []
-        self.object_manager.add_roi_object(self.paths)
+        for idx, path in enumerate(self.paths):
+            self.object_manager.add_roi_object(ROIObject(f'ROI{idx}', path))
 
-        print(len(self.object_manager.roi_objects))
         # Assuming the object_manager's add_roi_object is meant to handle the completed polygons
 
 

amadeusgpt/managers/object_manager.py

@@ -60,6 +60,7 @@ def load_objects_from_disk(self):
         pass
 
     def get_roi_object_names(self) -> List[str]:
+        
         return [obj.name for obj in self.roi_objects]
 
     def get_roi_objects(self) -> List[Object]:

conda/amadesuGPT-minimal.yml

@@ -3,7 +3,8 @@ name: amadeusgpt-minimal
 channels:
     - defaults
 dependencies:
-    - python<3.10
+    - python==3.10
+    - pytables==3.8.0
     - hdf5
     - pip
     - jupyter

notebook/EPM_demo.ipynb

@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
 [project]
 name = "AmadeusGPT"
 readme = "README.md"
-requires-python = ">=3.8"
+requires-python = ">=3.10"
 dynamic = ["version"]
 version = "0.0.2"
 

pyproject.toml

@@ -23,7 +23,7 @@ classifiers =
 [options]
 packages = find:
 include_package_data = True
-python_requires = >=3.8
+python_requires = >=3.10
 install_requires =
     openai # 0.03 is compatible with the newest openai 
     opencv-python-headless # 0.02