Fix deprecation warning force_all_finite -> ensure_all_finite for sklearn>=1.6 (#206)

Author: icarosadero

cebra/integrations/sklearn/utils.py

@@ -22,12 +22,26 @@
 import warnings
 
 import numpy.typing as npt
+import packaging
+import sklearn
 import sklearn.utils.validation as sklearn_utils_validation
 import torch
 
 import cebra.helper
 
 
+def _sklearn_check_array(array, **kwargs):
+    # NOTE(stes): See discussion in https://github.com/AdaptiveMotorControlLab/CEBRA/pull/206
+    # https://scikit-learn.org/1.6/modules/generated/sklearn.utils.check_array.html
+    # force_all_finite was renamed to ensure_all_finite and will be removed in 1.8.
+    if packaging.version.parse(
+            sklearn.__version__) < packaging.version.parse("1.6"):
+        if "ensure_all_finite" in kwargs:
+            kwargs["force_all_finite"] = kwargs["ensure_all_finite"]
+            del kwargs["ensure_all_finite"]
+    return sklearn_utils_validation.check_array(array, **kwargs)
+
+
 def update_old_param(old: dict, new: dict, kwargs: dict, default) -> tuple:
     """Handle deprecated arguments of a function until they are replaced.
 
@@ -74,15 +88,15 @@ def check_input_array(X: npt.NDArray, *, min_samples: int) -> npt.NDArray:
     Returns:
         The converted and validated array.
     """
-    return sklearn_utils_validation.check_array(
+    return _sklearn_check_array(
         X,
         accept_sparse=False,
         accept_large_sparse=False,
         dtype=("float16", "float32", "float64"),
         order=None,
         copy=False,
-        force_all_finite=True,
         ensure_2d=True,
+        ensure_all_finite=True,
         allow_nd=False,
         ensure_min_samples=min_samples,
         ensure_min_features=1,
@@ -105,15 +119,15 @@ def check_label_array(y: npt.NDArray, *, min_samples: int):
     Returns:
         The converted and validated labels.
     """
-    return sklearn_utils_validation.check_array(
+    return _sklearn_check_array(
         y,
         accept_sparse=False,
         accept_large_sparse=False,
         dtype="numeric",
         order=None,
         copy=False,
-        force_all_finite=True,
         ensure_2d=False,
+        ensure_all_finite=True,
         allow_nd=False,
         ensure_min_samples=min_samples,
     )