Revert docs action

Author: C-Achard

.github/workflows/build_docs.yml

@@ -7,30 +7,22 @@ on:
       - cy/docs-action
 
 jobs:
-  sphinx_docs_to_gh-pages:
+  build:
+
     runs-on: ubuntu-latest
-    name: Sphinx docs to gh-pages
+
     steps:
-      - uses: actions/checkout@v3
-        with:
-          fetch-depth: 0
-      - name: Make conda environment
-        uses: conda-incubator/setup-miniconda@v2
-        with:
-          python-version: 3.9    # Python version to build the html sphinx documentation
-          environment-file: devtools/conda-envs/docs_env.yaml    # Path to the documentation conda environment
-          auto-update-conda: false
-          auto-activate-base: false
-          show-channel-urls: true
-      - name: Installing the library
-        shell: bash -l {0}
-        run: |
-          python setup.cfg install
-      - name: Running the Sphinx to gh-pages Action
-        uses: uibcdf/[email protected]
-        with:
-          branch: main
-          dir_docs: docs
-          sphinxapiopts: '--separate -o . ../'
-          sphinxapiexclude: '../*setup* ../*.ipynb'
-          sphinxopts: ''
+    - run: sudo apt-get update && sudo apt-get install libgl1
+    - uses: actions/checkout@v3
+    # Standard drop-in approach that should work for most people.
+    - uses: ammaraskar/sphinx-action@master
+      with:
+        pre-build-command: "pip install -r requirements.txt napari-cellseg3d opencv-python-headless"
+        docs-folder: "docs/"
+
+    - name: GitHub Pages action
+      uses: peaceiris/[email protected]
+      with:
+        github_token: ${{ secrets.GITHUB_TOKEN }}
+        publish_dir: ./docs/_build/html
+

napari_cellseg3d/utils.py

@@ -14,8 +14,8 @@
 LOGGER = logging.getLogger(__name__)
 ###############
 # Global logging level setting
-LOGGER.setLevel(logging.DEBUG)
-# LOGGER.setLevel(logging.INFO)
+# LOGGER.setLevel(logging.DEBUG)
+LOGGER.setLevel(logging.INFO)
 ###############
 
 """
@@ -161,7 +161,7 @@ def align_array_sizes(array_shape, target_shape):
     for i in range(len(targets)):
         targets[i] = reverse_mapping[targets[i]]
     infos = np.unique(origins, return_index=True, return_counts=True)
-    info_dict = {"origins": infos[0], "index": infos[1], "counts": infos[2]}
+    {"origins": infos[0], "index": infos[1], "counts": infos[2]}
     # print(info_dict)
 
     final_orig = []

pyproject.toml

@@ -2,7 +2,9 @@
 requires = ["setuptools", "wheel"]
 build-backend = "setuptools.build_meta"
 
-
+[tool.ruff]
+# Never enforce `E501` (line length violations).
+ignore = ["E501"]
 
 [tool.black]
 line-length = 79