deploy: b569160

Author: C-Achard

.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: ad54f4571a6c738fa7915639895c01a7
+config: afcc097d01f222a99d9acfc47f5edfea
 tags: 645f666f9bcd5a90fca523b33c5a78b7

TODO.html

@@ -279,7 +279,7 @@
 
 
 
-      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3d" target="_blank"
+      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3D" target="_blank"
    class="btn btn-sm btn-source-repository-button dropdown-item"
    title="Source repository"
    data-bs-placement="left" data-bs-toggle="tooltip"
@@ -296,7 +296,7 @@
 
 
 
-      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3d/issues/new?title=Issue%20on%20page%20%2FTODO.html&body=Your%20issue%20content%20here." target="_blank"
+      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3D/issues/new?title=Issue%20on%20page%20%2FTODO.html&body=Your%20issue%20content%20here." target="_blank"
    class="btn btn-sm btn-source-issues-button dropdown-item"
    title="Open an issue"
    data-bs-placement="left" data-bs-toggle="tooltip"

_sources/source/guides/custom_model_template.rst

@@ -31,4 +31,4 @@ To add a custom model, you will need a **.py** file with the following structure
 .. note::
     **WIP** : Currently you must modify :doc:`model_framework.py <../code/_autosummary/napari_cellseg3d.code_models.model_framework>` as well : import your model class and add it to the ``model_dict`` attribute
 
-.. _file an issue: https://github.com/AdaptiveMotorControlLab/CellSeg3d/issues
+.. _file an issue: https://github.com/AdaptiveMotorControlLab/CellSeg3D/issues

_sources/source/guides/detailed_walkthrough.rst

@@ -207,7 +207,7 @@ To visualise some of the results when running on a folder, you can leave the **V
 .. note::
     Too plot your results, check out the `provided notebooks`_
 
-.. _provided notebooks: https://github.com/AdaptiveMotorControlLab/CellSeg3d/tree/main/notebooks
+.. _provided notebooks: https://github.com/AdaptiveMotorControlLab/CellSeg3D/tree/main/notebooks
 
 
 You can then launch inference and the results will be saved in your specified folder.
@@ -271,6 +271,6 @@ for the plots to work.
    Example of the plot present in the notebooks.
    Coordinates are based on centroids, the size represents the volume, the color, and the sphericity.
 
-.. _notebooks folder of the repository: https://github.com/AdaptiveMotorControlLab/CellSeg3d/tree/main/notebooks
+.. _notebooks folder of the repository: https://github.com/AdaptiveMotorControlLab/CellSeg3D/tree/main/notebooks
 
 With this complete, you can repeat the workflow as needed.

_sources/source/guides/installation_guide.rst

@@ -8,7 +8,7 @@ Please refer to the :ref:`section below <source/guides/installation_guide:ARM64
 .. warning::
     If you encounter any issues during installation, feel free to open an issue on our `GitHub repository`_.
 
-.. _GitHub repository: https://github.com/AdaptiveMotorControlLab/CellSeg3d/issues
+.. _GitHub repository: https://github.com/AdaptiveMotorControlLab/CellSeg3D/issues
 
 
 Installing pre-requisites
@@ -82,11 +82,11 @@ ______________________________
 
 .. _miniconda3: https://docs.conda.io/projects/conda/en/latest/user-guide/install/macos.html
 
-1. **Clone the repository** (`link <https://github.com/AdaptiveMotorControlLab/CellSeg3d>`_):
+1. **Clone the repository** (`link <https://github.com/AdaptiveMotorControlLab/CellSeg3D>`_):
 
 .. code-block::
 
-    git clone https://github.com/AdaptiveMotorControlLab/CellSeg3d.git
+    git clone https://github.com/AdaptiveMotorControlLab/CellSeg3D.git
 
 2. **Create the Conda Environment** :
 In the terminal, navigate to the CellSeg3D folder:

_sources/source/guides/training_wnet.rst

@@ -96,4 +96,4 @@ Common issues troubleshooting
 
 
 .. _WNet, A Deep Model for Fully Unsupervised Image Segmentation: https://arxiv.org/abs/1711.08506
-.. _open an issue: https://github.com/AdaptiveMotorControlLab/CellSeg3d/issues
+.. _open an issue: https://github.com/AdaptiveMotorControlLab/CellSeg3D/issues

genindex.html

@@ -278,7 +278,7 @@
 
 
 
-      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3d" target="_blank"
+      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3D" target="_blank"
    class="btn btn-sm btn-source-repository-button dropdown-item"
    title="Source repository"
    data-bs-placement="left" data-bs-toggle="tooltip"
@@ -295,7 +295,7 @@
 
 
 
-      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3d/issues/new?title=Issue%20on%20page%20%2Fgenindex.html&body=Your%20issue%20content%20here." target="_blank"
+      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3D/issues/new?title=Issue%20on%20page%20%2Fgenindex.html&body=Your%20issue%20content%20here." target="_blank"
    class="btn btn-sm btn-source-issues-button dropdown-item"
    title="Open an issue"
    data-bs-placement="left" data-bs-toggle="tooltip"

py-modindex.html

@@ -281,7 +281,7 @@
 
 
 
-      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3d" target="_blank"
+      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3D" target="_blank"
    class="btn btn-sm btn-source-repository-button dropdown-item"
    title="Source repository"
    data-bs-placement="left" data-bs-toggle="tooltip"
@@ -298,7 +298,7 @@
 
 
 
-      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3d/issues/new?title=Issue%20on%20page%20%2Fpy-modindex.html&body=Your%20issue%20content%20here." target="_blank"
+      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3D/issues/new?title=Issue%20on%20page%20%2Fpy-modindex.html&body=Your%20issue%20content%20here." target="_blank"
    class="btn btn-sm btn-source-issues-button dropdown-item"
    title="Open an issue"
    data-bs-placement="left" data-bs-toggle="tooltip"

search.html

@@ -280,7 +280,7 @@
 
 
 
-      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3d" target="_blank"
+      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3D" target="_blank"
    class="btn btn-sm btn-source-repository-button dropdown-item"
    title="Source repository"
    data-bs-placement="left" data-bs-toggle="tooltip"
@@ -297,7 +297,7 @@
 
 
 
-      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3d/issues/new?title=Issue%20on%20page%20%2Fsearch.html&body=Your%20issue%20content%20here." target="_blank"
+      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3D/issues/new?title=Issue%20on%20page%20%2Fsearch.html&body=Your%20issue%20content%20here." target="_blank"
    class="btn btn-sm btn-source-issues-button dropdown-item"
    title="Open an issue"
    data-bs-placement="left" data-bs-toggle="tooltip"

source/code/_autosummary/napari_cellseg3d.code_models.crf.html

@@ -281,7 +281,7 @@
 
 
 
-      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3d" target="_blank"
+      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3D" target="_blank"
    class="btn btn-sm btn-source-repository-button dropdown-item"
    title="Source repository"
    data-bs-placement="left" data-bs-toggle="tooltip"
@@ -298,7 +298,7 @@
 
 
 
-      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3d/issues/new?title=Issue%20on%20page%20%2Fsource/code/_autosummary/napari_cellseg3d.code_models.crf.html&body=Your%20issue%20content%20here." target="_blank"
+      <li><a href="https://github.com/AdaptiveMotorControlLab/CellSeg3D/issues/new?title=Issue%20on%20page%20%2Fsource/code/_autosummary/napari_cellseg3d.code_models.crf.html&body=Your%20issue%20content%20here." target="_blank"
    class="btn btn-sm btn-source-issues-button dropdown-item"
    title="Open an issue"
    data-bs-placement="left" data-bs-toggle="tooltip"