rm direct dependency on CRF in pyproject.toml

Author: C-Achard

napari_cellseg3d/code_models/crf.py

@@ -31,7 +31,7 @@
 if not CRF_INSTALLED:
     logger.info(
         "pydensecrf not installed, CRF post-processing will not be available. "
-        "Please install by running pip install cellseg3d[crf]"
+        "Please install by running : pip install pydensecrf@git+https://github.com/lucasb-eyer/pydensecrf.git#egg=master"
         "This is not a hard requirement, you do not need it to install it unless you want to use the CRF post-processing step."
     )
 else:
@@ -42,24 +42,6 @@
         unary_from_softmax,
     )
 
-# try:
-#     import pydensecrf.densecrf as dcrf
-#     from pydensecrf.utils import (
-#         create_pairwise_bilateral,
-#         create_pairwise_gaussian,
-#         unary_from_softmax,
-#     )
-#     CRF_INSTALLED = True
-# except (ImportError, ModuleNotFoundError):
-#     logger.info(
-#         "pydensecrf not installed, CRF post-processing will not be available. "
-#         "Please install by running pip install cellseg3d[crf]"
-#         "This is not a hard requirement, you do not need it to install it unless you want to use the CRF post-processing step."
-#     )
-#     CRF_INSTALLED = False
-# use importlib instead to check if pydensecrf is installed
-
-
 __author__ = "Yves Paychère, Colin Hofmann, Cyril Achard"
 __credits__ = [
     "Yves Paychère",

pyproject.toml

@@ -123,9 +123,9 @@ profile = "black"
 line_length = 79
 
 [project.optional-dependencies]
-crf = [
-    "pydensecrf@git+https://github.com/lucasb-eyer/pydensecrf.git#egg=master",
-]
+#crf = [
+#   "pydensecrf@git+https://github.com/lucasb-eyer/pydensecrf.git#egg=master",
+#]
 onnx-cpu = [
     "onnx",
     "onnxruntime"
@@ -155,7 +155,7 @@ test = [
     "coverage",
     "tox",
     "twine",
-    "pydensecrf@git+https://github.com/lucasb-eyer/pydensecrf.git#egg=master",
+#   "pydensecrf@git+https://github.com/lucasb-eyer/pydensecrf.git#egg=master",
     "onnx",
     "onnxruntime",
 ]