1616
1717## Installation
1818
19- 💻 See the [ Installation page] in the documentation for detailed instructions.
19+ 💻 See the [ Installation page] ( https://adaptivemotorcontrollab.github.io/CellSeg3d/welcome.html ) in the documentation for detailed instructions.
2020
2121## Documentation
2222
23- 📚 A lot of documentation is available at https://AdaptiveMotorControlLab.github.io/CellSeg3D
24-
23+ 📚 A lot of documentation is available at [ https://AdaptiveMotorControlLab.github.io/CellSeg3D
24+ ] ( https://adaptivemotorcontrollab.github.io/CellSeg3d/welcome.html )
2525You can also generate docs by running `` make html `` in the docs/ folder.
2626
2727## Quick Start
@@ -39,15 +39,15 @@ Then go into Plugins > napari-cellseg3d, and choose which tool to use.
3939
4040## News
4141
42- ** New version : v0.2.0**
42+ ** New version: v0.2.0**
4343
4444- Changed project name to "napari_cellseg3d" to avoid setuptools deprecation
4545- Small API changes for training/inference from a script
4646- Some fixes to WandB integration ad csv saving after training
4747
48- Previous additions :
48+ Previous additions:
4949
50- - v0.1.2 : Fixed manifest issue for PyPi
50+ - v0.1.2: Fixed manifest issue for PyPi
5151- Improved training interface
5252- Unsupervised model : WNet3D
5353 - Generate labels directly from raw data!
@@ -158,6 +158,21 @@ Distributed under the terms of the [MIT] license.
158158[ MONAI's optional dependencies ] : https://docs.monai.io/en/stable/installation.html#installing-the-recommended-dependencies
159159[ MONAI ] : https://docs.monai.io/en/stable/installation.html#installing-the-recommended-dependencies
160160
161+ ## Citation
162+
163+ ```
164+ @article {Achard2024,
165+ author = {Achard, Cyril and Kousi, Timokleia and Frey, Markus and Vidal, Maxime and Paychere, Yves and Hofmann, Colin and Iqbal, Asim and Hausmann, Sebastien B. and Pages, Stephane and Mathis, Mackenzie W.},
166+ title = {CellSeg3D: self-supervised 3D cell segmentation for microscopy},
167+ elocation-id = {2024.05.17.594691},
168+ year = {2024},
169+ doi = {10.1101/2024.05.17.594691},
170+ publisher = {Cold Spring Harbor Laboratory},
171+ URL = {https://www.biorxiv.org/content/early/2024/05/17/2024.05.17.594691},
172+ eprint = {https://www.biorxiv.org/content/early/2024/05/17/2024.05.17.594691.full.pdf},
173+ journal = {bioRxiv}
174+ }
175+ ```
161176## Acknowledgements
162177
163178This plugin was developed by originally Cyril Achard, Maxime Vidal, Mackenzie Mathis.
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