Bump to 0.2.1 + typos fixes

Author: C-Achard

README.md

@@ -59,17 +59,17 @@ The strength of our approach is we can match supervised model performance with p
 
 ## News
 
-**New version: v0.2.0post1**
+**New version: v0.2.1**
 
-- v0.2.0post1:
+- v0.2.1:
   - Updated plugin default behaviors across the board to be more readily applicable to demo data
   - Threshold value in inference is now automatically set by default according to performance on demo data on a per-model basis
   - Added a grid search utility to find best thresholds for supervised models
 
 - v0.2.0:
   - Changed project name to "napari_cellseg3d" to avoid setuptools deprecation
   - Small API changes for training/inference from a script
-  - Some fixes to WandB integration ad csv saving after training
+  - Some fixes to WandB integration and csv saving after training
 
 Previous additions:
 

napari_cellseg3d/__init__.py

@@ -1,3 +1,3 @@
 """napari-cellseg3d - napari plugin for cell segmentation."""
 
-__version__ = "0.2.0post1"
+__version__ = "0.2.1"

napari_cellseg3d/code_models/instance_segmentation.py

@@ -418,15 +418,10 @@ def clear_small_objects(image, threshold, is_file_path=False):
     if is_file_path:
         image = imread(image)
 
-    # print(threshold)
-
     labeled = label(image)
 
     result = remove_small_objects(labeled, threshold)
 
-    # print(np.sum(labeled))
-    # print(np.sum(result))
-
     if np.sum(labeled) == np.sum(result):
         print("Warning : no objects were removed")
 

napari_cellseg3d/code_plugins/plugin_helper.py

@@ -44,7 +44,7 @@ def __init__(self, viewer: "napari.viewer.Viewer"):
         self.logo_label.setToolTip("Open Github page")
 
         self.info_label = ui.make_label(
-            f"You are using napari-cellseg3d v.{'0.2.0post1'}\n\n"
+            f"You are using napari-cellseg3d v.{'0.2.1'}\n\n"
             f"Plugin for cell segmentation developed\n"
             f"by the Mathis Lab of Adaptive Motor Control\n\n"
             f"Code by :\nCyril Achard\nMaxime Vidal\nJessy Lauer\nMackenzie Mathis\n"

napari_cellseg3d/code_plugins/plugin_model_inference.py

@@ -415,7 +415,6 @@ def _set_default_threshold(self):
         # Whenever a model is selected, set the default threshold from the model file
         model_name = self.model_choice.currentText()
         threshold = config.MODEL_LIST[model_name].default_threshold
-        print(threshold)
         self.thresholding_slider.slider_value = threshold * 100
 
     def _build(self):

setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = napari_cellseg3d
-version = 0.2.0post1
+version = 0.2.1
 
 [options]
 packages = find: