removing user specific code

Author: MMathisLab

napari_cellseg3d/plugin_crop.py

@@ -72,19 +72,7 @@ def __init__(self, viewer: "napari.viewer.Viewer", parent):
 
         self.build()
 
-        ###########################################
-        if utils.ENABLE_TEST_MODE():
-            # TODO : remove/disable once done
-            if self.as_folder:
-                self.image_path = "C:/Users/Cyril/Desktop/Proj_bachelor/data/visual_png/sample"
-                if self.crop_label_choice.isChecked():
-                    self.label_path = "C:/Users/Cyril/Desktop/Proj_bachelor/data/visual_png/sample_labels"
-            else:
-                self.image_path = "C:/Users/Cyril/Desktop/Proj_bachelor/data/visual_tif/volumes/images.tif"
-                if self.crop_label_choice.isChecked():
-                    self.label_path = "C:/Users/Cyril/Desktop/Proj_bachelor/data/visual_tif/labels/testing_im.tif"
-
-        ###########################################
+        
 
     def toggle_label_path(self):
         if self.crop_label_choice.isChecked():

napari_cellseg3d/plugin_metrics.py

@@ -67,23 +67,7 @@ def __init__(self, viewer: "napari.viewer.Viewer", parent):
 
         self.build()
 
-        ######################################
-        # TODO test remove
-        import glob
-        import os
-
-        if utils.ENABLE_TEST_MODE():
-            ground_directory = "C:/Users/Cyril/Desktop/Proj_bachelor/data/cropped_visual/train/lab"
-            # ground_directory = "C:/Users/Cyril/Desktop/test/labels"
-            pred_directory = "C:/Users/Cyril/Desktop/test/pred"
-            # pred_directory = "C:/Users/Cyril/Desktop/test"
-            self.images_filepaths = sorted(
-                glob.glob(os.path.join(ground_directory, "*.tif"))
-            )
-            self.labels_filepaths = sorted(
-                glob.glob(os.path.join(pred_directory, "*.tif"))
-            )
-        ###############################################################################
+        
 
     def build(self):
         """Builds the layout of the widget."""

napari_cellseg3d/plugin_model_training.py

@@ -132,44 +132,7 @@ def __init__(
 
         self.save_as_zip = False
         """Whether to zip results folder once done. Creates a zipped copy of the results folder."""
-        ######################
-        ######################
-        ######################
-        # TEST TODO REMOVE
-        import glob
-
-        if utils.ENABLE_TEST_MODE():
-            directory = os.path.dirname(os.path.realpath(__file__)) + str(
-                Path("/models/dataset/volumes")
-            )
-            self.data_path = directory
-
-            lab_directory = os.path.dirname(os.path.realpath(__file__)) + str(
-                Path("/models/dataset/lab_sem")
-            )
-            self.label_path = lab_directory
-
-            self.images_filepaths = sorted(
-                glob.glob(os.path.join(directory, "*.tif"))
-            )
-
-            self.labels_filepaths = sorted(
-                glob.glob(os.path.join(lab_directory, "*.tif"))
-            )
-
-            if results_path == "":
-                self.results_path = "C:/Users/Cyril/Desktop/test/models"
-            else:
-                self.results_path = results_path
-
-            if data_path != "":
-                self.data_path = data_path
-
-            if label_path != "":
-                self.label_path = label_path
-        #######################
-        #######################
-        #######################
+        
 
         # recover default values
         self.num_samples = samples