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Add fig4 quadruped plots (#17)
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6 files changed

+518
-17
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data/Figure4/Brownhorseoutofshadow.mp4.json

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data/Figure4/keypoints.yaml

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all_joints:
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- - 0
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- - 1
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- - 2
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all_joints_names:
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- nose
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- upper_jaw
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- lower_jaw
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- mouth_end_right
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- mouth_end_left
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- right_eye
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- right_earbase
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- right_earend
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- right_antler_base
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- right_antler_end
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- left_eye
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- left_earbase
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- left_earend
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- left_antler_base
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- left_antler_end
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- neck_base
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- neck_end
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- throat_base
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- throat_end
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- back_base
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- back_end
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- back_middle
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- tail_base
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- tail_end
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- front_left_thai
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- front_left_knee
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- front_left_paw
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- front_right_thai
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- front_right_knee
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- front_right_paw
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- back_left_paw
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- back_left_thai
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- back_right_thai
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- back_left_knee
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- back_right_knee
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- back_right_paw
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- belly_bottom
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- body_middle_right
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- body_middle_left
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alpha_r: 0.02
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apply_prob: 0.5
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batch_size: 1
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clahe: true
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claheratio: 0.1
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crop_sampling: hybrid
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crop_size:
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- 400
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- 400
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cropratio: 0.4
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dataset: training-datasets/iteration-0/UnaugmentedDataSet_ma_superquadrupedMarch30/ma_superquadruped_maDLC_scorer85shuffle1.pickle
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dataset_type: multi-animal-imgaug
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decay_steps: 30000
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display_iters: 500
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edge: false
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emboss:
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alpha:
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- 0.0
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- 1.0
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embossratio: 0.1
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strength:
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- 0.5
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- 1.5
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global_scale: 0.8
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histeq: true
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histeqratio: 0.1
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init_weights:
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intermediate_supervision: false
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intermediate_supervision_layer: 12
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location_refinement: true
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locref_huber_loss: true
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locref_loss_weight: 0.05
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locref_stdev: 7.2801
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lr_init: 0.0005
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max_input_size: 1500
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max_shift: 0.4
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metadataset: training-datasets/iteration-0/UnaugmentedDataSet_ma_superquadrupedMarch30/Documentation_data-ma_superquadruped_85shuffle1.pickle
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min_input_size: 64
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mirror: false
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multi_stage: true
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multi_step:
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- - 0.0001
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- 7500
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- - 5.0e-05
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- 12000
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- - 1.0e-05
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- 1000000
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net_type: resnet_50
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num_idchannel: 0
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num_joints: 39
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num_limbs: 741
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optimizer: adam
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pafwidth: 20
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pairwise_huber_loss: false
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pairwise_loss_weight: 0.1
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pairwise_predict: false
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partaffinityfield_graph: []
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partaffinityfield_predict: false
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pos_dist_thresh: 17
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pre_resize: []
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project_path:
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rotation: 25
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rotratio: 0.4
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save_iters: 10000
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scale_jitter_lo: 0.5
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scale_jitter_up: 1.25
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sharpen: false
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sharpenratio: 0.3
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weigh_only_present_joints: false
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gradient_masking: true

data/Figure4/ncontacts.npy

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data/Figure4/stridelengths.h5

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figures/Figure4.ipynb

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