-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathWetProtocolEmpty OWL syntax from proteje.owl
More file actions
419 lines (276 loc) · 12.5 KB
/
WetProtocolEmpty OWL syntax from proteje.owl
File metadata and controls
419 lines (276 loc) · 12.5 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
@prefix : <http://www.semanticweb.org/ad/ontologies/2018/3/untitled-ontology-6#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix www: <http://www.wet.protocol#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@base <http://www.wet.protocol> .
<http://www.wet.protocol> rdf:type owl:Ontology .
#################################################################
# Object Properties
#################################################################
### http://www.wet.protocol#content
www:content rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
rdfs:domain www:Container ;
rdfs:range www:Liquid .
### http://www.wet.protocol#incubateTime
www:incubateTime rdf:type owl:ObjectProperty ;
rdfs:domain www:Incubate ;
rdfs:range www:Time .
### http://www.wet.protocol#liquidVolume
www:liquidVolume rdf:type owl:ObjectProperty ;
rdfs:domain www:Liquid ;
rdfs:range www:Volume .
### http://www.wet.protocol#minimumVolume
www:minimumVolume rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
rdfs:domain www:Pipette ;
rdfs:range www:Volume .
### http://www.wet.protocol#moveDestination
www:moveDestination rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf www:preexisting ;
rdfs:domain www:Move ;
rdfs:range www:Place .
### http://www.wet.protocol#moveSource
www:moveSource rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf www:preexisting ;
rdfs:domain www:Move ;
rdfs:range www:Place .
### http://www.wet.protocol#pipette
www:pipette rdf:type owl:ObjectProperty ;
rdfs:domain www:PipetteAspiration ,
www:PipetteRelease ;
rdfs:range www:Pipette .
### http://www.wet.protocol#pipetteAspirationVolume
www:pipetteAspirationVolume rdf:type owl:ObjectProperty ;
rdfs:domain www:PipetteAspiration ;
rdfs:range www:Volume .
### http://www.wet.protocol#pipetteReleaseVolume
www:pipetteReleaseVolume rdf:type owl:ObjectProperty ;
rdfs:domain www:PipetteRelease ;
rdfs:range www:Volume .
### http://www.wet.protocol#preexisting
www:preexisting rdf:type owl:ObjectProperty .
### http://www.wet.protocol#provisionAndPlaceWhere
www:provisionAndPlaceWhere rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf www:preexisting ;
rdfs:domain www:ProvisionAndPlace ;
rdfs:range www:Place .
### http://www.wet.protocol#provisionedObject
www:provisionedObject rdf:type owl:ObjectProperty ;
rdfs:domain www:Provision ;
rdfs:range www:MovableObject .
### http://www.wet.protocol#steps
www:steps rdf:type owl:ObjectProperty ;
rdfs:domain www:Transfer ;
rdfs:range www:Step .
### http://www.wet.protocol#temperatureControlledStoreTemperature
www:temperatureControlledStoreTemperature rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf www:incubateTime ;
rdfs:domain www:TemperatureControlledStore ;
rdfs:range www:Temperature .
### http://www.wet.protocol#volumetricContainerVolume
www:volumetricContainerVolume rdf:type owl:ObjectProperty ;
rdfs:domain www:VolumetricContainer ;
rdfs:range www:Volume .
#################################################################
# Data properties
#################################################################
### http://www.wet.protocol#centrifugeTubeRackColumnsCount
www:centrifugeTubeRackColumnsCount rdf:type owl:DatatypeProperty ;
rdfs:domain www:CentifugeTubeRack ;
rdfs:range xsd:int .
### http://www.wet.protocol#centrifugeTubeRackRowsCount
www:centrifugeTubeRackRowsCount rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf owl:topDataProperty ;
rdfs:domain www:CentifugeTubeRack ;
rdfs:range xsd:int .
### http://www.wet.protocol#dummyClassDataProperty
www:dummyClassDataProperty rdf:type owl:DatatypeProperty ;
rdfs:domain www:DummyClass ;
rdfs:range xsd:string .
### http://www.wet.protocol#fasta
www:fasta rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf owl:topDataProperty ;
rdfs:domain www:Dna ;
rdfs:range xsd:string .
### http://www.wet.protocol#manufacturer
www:manufacturer rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf owl:topDataProperty ;
rdfs:domain www:Container ,
www:Store ;
rdfs:range xsd:string .
### http://www.wet.protocol#phasePurpose
www:phasePurpose rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf owl:topDataProperty ;
rdfs:domain www:Phase ;
rdfs:range xsd:string .
### http://www.wet.protocol#pipetteRackHookCount
www:pipetteRackHookCount rdf:type owl:DatatypeProperty ;
rdfs:domain www:PipetteRack ;
rdfs:range xsd:int .
### http://www.wet.protocol#plasmidName
www:plasmidName rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf owl:topDataProperty ;
rdfs:domain www:Plasmid ;
rdfs:range xsd:string .
### http://www.wet.protocol#protocolCounter
www:protocolCounter rdf:type owl:DatatypeProperty ;
rdfs:domain www:Protocol ;
rdfs:range xsd:int .
### http://www.wet.protocol#protocolVersion
www:protocolVersion rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf owl:topDataProperty ;
rdfs:domain www:Protocol ;
rdfs:range xsd:string .
### http://www.wet.protocol#quantityMultiplication
www:quantityMultiplication rdf:type owl:DatatypeProperty ;
rdfs:domain www:Quantity ;
rdfs:range xsd:int .
### http://www.wet.protocol#quantityUnit
www:quantityUnit rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf owl:topDataProperty ;
rdfs:domain www:Quantity ;
rdfs:range xsd:string .
### http://www.wet.protocol#quantityValue
www:quantityValue rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf owl:topDataProperty ;
rdfs:domain www:Quantity ;
rdfs:range xsd:decimal .
### http://www.wet.protocol#stepCoordinatesProperty
www:stepCoordinatesProperty rdf:type owl:DatatypeProperty ;
rdfs:range xsd:string .
#################################################################
# Classes
#################################################################
### http://www.wet.protocol#Bench
www:Bench rdf:type owl:Class ;
rdfs:subClassOf www:Store .
### http://www.wet.protocol#CentifugeTubeRack
www:CentifugeTubeRack rdf:type owl:Class ;
rdfs:subClassOf www:Container .
### http://www.wet.protocol#CentrifugeTube
www:CentrifugeTube rdf:type owl:Class ;
rdfs:subClassOf www:VolumetricContainer .
### http://www.wet.protocol#Container
www:Container rdf:type owl:Class ;
rdfs:subClassOf www:Equipment .
### http://www.wet.protocol#Dna
www:Dna rdf:type owl:Class ;
rdfs:subClassOf www:OrganicCompound .
### http://www.wet.protocol#DummyClass
www:DummyClass rdf:type owl:Class .
### http://www.wet.protocol#Enzime
www:Enzime rdf:type owl:Class ;
rdfs:subClassOf www:OrganicCompound .
### http://www.wet.protocol#Equipment
www:Equipment rdf:type owl:Class ;
rdfs:subClassOf www:MovableObject .
### http://www.wet.protocol#Incubate
www:Incubate rdf:type owl:Class ;
rdfs:subClassOf www:Step .
### http://www.wet.protocol#Liquid
www:Liquid rdf:type owl:Class ;
rdfs:subClassOf www:MovableObject .
### http://www.wet.protocol#MovableObject
www:MovableObject rdf:type owl:Class ;
rdfs:subClassOf www:Place .
### http://www.wet.protocol#Move
www:Move rdf:type owl:Class ;
rdfs:subClassOf www:Step .
### http://www.wet.protocol#NonLiquid
www:NonLiquid rdf:type owl:Class ;
rdfs:subClassOf www:MovableObject .
### http://www.wet.protocol#OrganicCompound
www:OrganicCompound rdf:type owl:Class ;
rdfs:subClassOf www:Liquid ;
owl:disjointWith www:Reagent .
### http://www.wet.protocol#Phase
www:Phase rdf:type owl:Class ;
rdfs:subClassOf www:Step .
### http://www.wet.protocol#Pipette
www:Pipette rdf:type owl:Class ;
rdfs:subClassOf www:VolumetricContainer .
### http://www.wet.protocol#PipetteAspiration
www:PipetteAspiration rdf:type owl:Class ;
rdfs:subClassOf www:Step .
### http://www.wet.protocol#PipetteRack
www:PipetteRack rdf:type owl:Class ;
rdfs:subClassOf www:Container .
### http://www.wet.protocol#PipetteRelease
www:PipetteRelease rdf:type owl:Class ;
rdfs:subClassOf www:Step .
### http://www.wet.protocol#Place
www:Place rdf:type owl:Class .
### http://www.wet.protocol#Plasmid
www:Plasmid rdf:type owl:Class ;
rdfs:subClassOf www:OrganicCompound .
### http://www.wet.protocol#Protocol
www:Protocol rdf:type owl:Class .
### http://www.wet.protocol#Provision
www:Provision rdf:type owl:Class ;
rdfs:subClassOf www:Step .
### http://www.wet.protocol#ProvisionAndPlace
www:ProvisionAndPlace rdf:type owl:Class ;
rdfs:subClassOf www:Provision .
### http://www.wet.protocol#Quantity
www:Quantity rdf:type owl:Class .
### http://www.wet.protocol#Reagent
www:Reagent rdf:type owl:Class ;
rdfs:subClassOf www:Liquid .
### http://www.wet.protocol#Step
www:Step rdf:type owl:Class .
### http://www.wet.protocol#Store
www:Store rdf:type owl:Class ;
rdfs:subClassOf www:MovableObject .
### http://www.wet.protocol#Supplier
www:Supplier rdf:type owl:Class ;
rdfs:subClassOf www:Place .
### http://www.wet.protocol#Temperature
www:Temperature rdf:type owl:Class ;
rdfs:subClassOf www:Quantity .
### http://www.wet.protocol#TemperatureControlledStore
www:TemperatureControlledStore rdf:type owl:Class ;
rdfs:subClassOf www:Store .
### http://www.wet.protocol#TestTube
www:TestTube rdf:type owl:Class ;
rdfs:subClassOf www:VolumetricContainer .
### http://www.wet.protocol#Time
www:Time rdf:type owl:Class ;
rdfs:subClassOf www:Quantity .
### http://www.wet.protocol#Transfer
www:Transfer rdf:type owl:Class ;
rdfs:subClassOf www:Step .
### http://www.wet.protocol#Volume
www:Volume rdf:type owl:Class ;
rdfs:subClassOf www:Quantity .
### http://www.wet.protocol#VolumetricContainer
www:VolumetricContainer rdf:type owl:Class ;
rdfs:subClassOf www:Container .
#################################################################
# Individuals
#################################################################
### http://www.wet.protocol#topProtocolInstance
www:topProtocolInstance rdf:type owl:NamedIndividual ,
www:Protocol ;
www:protocolCounter "0"^^xsd:int ;
www:protocolVersion "Version 0.1"^^xsd:string ;
www:stepCoordinatesProperty "0.0" .
#################################################################
# General axioms
#################################################################
[ rdf:type owl:AllDisjointClasses ;
owl:members ( www:CentifugeTubeRack
www:Temperature
www:Volume
)
] .
[ rdf:type owl:AllDisjointClasses ;
owl:members ( www:Dna
www:Enzime
www:Plasmid
)
] .
### Generated by the OWL API (version 4.2.8.20170104-2310) https://github.com/owlcs/owlapi