Merge pull request #44 from tomography/RCv0.3

RCv0.3

Author: carterbox

docs/demos/FullReferenceMetrics.ipynb

@@ -7,8 +7,9 @@ API
 
    api/xdesign.acquisition
    api/xdesign.algorithms
-   api/xdesign.feature
    api/xdesign.geometry
+   api/xdesign.constants
+   api/xdesign.formats
    api/xdesign.material
    api/xdesign.metrics
    api/xdesign.phantom
@@ -17,4 +18,4 @@ API
 .. automodule:: xdesign
    :members:
    :undoc-members:
-   :show-inheritance: 
+   :show-inheritance:

docs/demos/NoReferenceMetrics.ipynb

@@ -2,20 +2,22 @@
 ==========================
 
 .. automodule:: xdesign.acquisition
-   :members:
-   :show-inheritance:
-   :undoc-members:
-   :synopsis: Defines objects related to collection and organization of probe data.
+  :members:
+  :show-inheritance:
+  :undoc-members:
 
-   .. rubric:: **Functions:**
+  .. rubric:: **Classes:**
 
-   .. autosummary::
+  .. autosummary::
 
-      Beam
-      Probe
-      sinogram
-      angleogram
-      raster_scan
-      angle_scan
+    Beam
+    Probe
 
-.. moduleauthor:: Doga Gursoy <dgursoy@aps.anl.gov>
+  .. rubric:: **Functions:**
+
+  .. autosummary::
+
+    sinogram
+    angleogram
+    raster_scan
+    angle_scan

docs/demos/Shepp.ipynb

@@ -5,16 +5,13 @@
    :members:
    :show-inheritance:
    :undoc-members:
-   :synopsis: Defines methods for reconstructing data from the :mod:`.acquisition` module.
 
    .. rubric:: **Functions:**
 
    .. autosummary::
 
-      reconstruct
       art
       sirt
       mlem
       stream
-
-.. moduleauthor:: Doga Gursoy <dgursoy@aps.anl.gov>
+      update_progress

docs/demos/StandardPatterns.ipynb

@@ -0,0 +1,4 @@
+:mod:`xdesign.constants`
+========================
+
+.. automodule:: xdesign.constants

docs/source/api.rst

@@ -0,0 +1,11 @@
+:mod:`xdesign.formats`
+======================
+
+.. automodule:: xdesign.formats
+   :members:
+   :show-inheritance:
+   :undoc-members:
+
+   .. rubric:: **Functions:**
+
+   .. autosummary::