index.Rmd

--- 
title: "Biologijos studijų analizė"
author: "Paulius Alaburda"
date: "`r Sys.Date()`"
site: bookdown::bookdown_site
documentclass: book
bibliography: [book.bib, packages.bib]
biblio-style: apalike
link-citations: yes
description: "Atvejų knyga apie tai, kaip skaityti mokslinius straipsnius ir juos analizuoti."
---

# Kas tai?

Minimali atvejų analizės knyga

# TODO

Paper case studies
Take inspiration from calling bullshit
https://callingbullshit.org/case_studies.html
Case studies, preceded by introduction, explanation of context, a glossary of terms, chart interpretation 
Multiple tiers of questions: from checkdown reading questions to advanced discussion type questions
Goal: student should be able to approach the paper with an understanding of what he is about to read, have passages highlighted for instructional reading and leave with a better understanding of what's being researched as well as why biology is interesting
Intro paper: what is the structure of a paper? What is a preprint? What tools are used to write papers? 
Open access only! 
Topics: Genetics, microbiology, enzymes, crispr, covid, agrocultural papers, ecological papers
Introduction of methods to showcase how they are used and what can they tell us


# Potencialiai geri straipsniai

https://www.biorxiv.org/content/10.1101/2020.05.21.106740v1.full
https://www.nature.com/articles/s41581-020-0297-2

h1. Covid Antibodies 
What are the fx of abs? What is happening w citotoxicity? Can abs be created so that they anti-inflammatory only? 
Can we present the virus in a different way? 
What are advantages and disadvantages of different ab methods? 
What advantage is there whem abs are present in the mucosa. Mother's milk, eye secretion? 
https://www.knowablemagazine.org/article/health-disease/2020/what-cytokine-storm
https://www.nature.com/articles/s41587-020-0577-1
https://www.nature.com/articles/s41577-020-0321-6
https://twitter.com/EricTopol/status/1269644328676155392?s=09