Haplohseq is a tool for identifying regions of allelic imbalance in sequence data obtained from impure samples.
This is a slightly modified source tree to faciliate packaging in FreeBSD ports, pkgsrc, and similar package managers.
The official download site is scheet.org/software.html to obtain haplohseq.
See https://sites.google.com/site/integrativecancergenomics/software/haplohseq for documentation.