Data/filtered plots (#159)

* add 0 structure scores to bonus

* update merging manual scores

* add fish manual zero structure score csvs

* collating for revised plots

* quilt revised plot dataset

* update public quilt for revised manuscript

* dont need test rename

Co-authored-by: Tanya Grancharova <[email protected]>

Author: tanyasg

data/plots_dataset/distribute_revised_plots_dataset.py

@@ -0,0 +1,44 @@
+import subprocess
+
+import fire
+import quilt3
+
+from fish_morphology_code.analysis.collate_revised_plot_dataset import collate_revised
+
+
+def manuscript_plots_dataset(
+    test=False,
+    col_name_map={},
+    dataset_name="revised_manuscript_plots",
+    package_owner="tanyasg",
+    readme_path="README.md",
+    s3_bucket="s3://allencell-internal-quilt",
+):
+
+    df = collate_revised()
+
+    # subsample df for a test dataset
+    if test:
+        df = df.sample(2, random_state=0)
+        dataset_name = f"{dataset_name}_test"
+
+    # create the dataset
+    p = quilt3.Package()
+    p = p.set("README.md", readme_path)
+    p = p.set("data.csv", df)
+
+    # tag with commit hash
+    label = (
+        subprocess.check_output(["git", "rev-parse", "HEAD"]).strip().decode("utf-8")
+    )
+
+    # upload to quilt
+    p.push(
+        f"{package_owner}/{dataset_name}",
+        s3_bucket,
+        message=f"git commit hash of fish_morphology_code = {label}",
+    )
+
+
+if __name__ == "__main__":
+    fire.Fire(manuscript_plots_dataset)