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This repository was archived by the owner on Oct 15, 2025. It is now read-only.

Update AICSImageProcessing #4

@evamaxfield

Description

@evamaxfield

Use Case

aicsimageprocessing is used heavily in the single cell processing pipeline, and other already released projects (segmenter), and it isn't in the greatest place. Both for my sanity, and for cleaning code standards it would be great to update the package to have tests for every function, add docstrings, etc.

Solution

Not necessarily a full rewrite of the package but something in-between at least docstring upgrades and a full rewrite would be great. I am specifically thinking about how I believe some functions are written specifically with image dimensions assumed when passed in but not documented anywhere.

Alternatives

Leave as is. Continue on with added tech debt.

Stakeholders

Assay Dev (Matheus, Jianxu), Modeling (Rory, Jackson), and Dan

Major Components

[ ] Initial work of cataloging issues or potential problem spots with stakeholders.
[ ] Plan for stable API
[ ] Implement major revisions
[ ] Implement tests + docstrings

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