diff --git a/src/DataSchemas/aind_behavior_vr_foraging.json b/src/DataSchemas/aind_behavior_vr_foraging.json index b13edd8c..f77fbfcc 100644 --- a/src/DataSchemas/aind_behavior_vr_foraging.json +++ b/src/DataSchemas/aind_behavior_vr_foraging.json @@ -3,14 +3,14 @@ "AindBehaviorSessionModel": { "properties": { "aind_behavior_services_pkg_version": { - "default": "0.12.2", + "default": "0.12.3", "pattern": "^(0|[1-9]\\d*)\\.(0|[1-9]\\d*)\\.(0|[1-9]\\d*)(?:-((?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\\.(?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\\+([0-9a-zA-Z-]+(?:\\.[0-9a-zA-Z-]+)*))?$", "title": "aind_behavior_services package version", "type": "string" }, "version": { - "const": "0.12.2", - "default": "0.12.2", + "const": "0.12.3", + "default": "0.12.3", "title": "Version", "type": "string" }, @@ -353,7 +353,7 @@ "AindVrForagingRig": { "properties": { "aind_behavior_services_pkg_version": { - "default": "0.12.2", + "default": "0.12.3", "pattern": "^(0|[1-9]\\d*)\\.(0|[1-9]\\d*)\\.(0|[1-9]\\d*)(?:-((?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\\.(?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\\+([0-9a-zA-Z-]+(?:\\.[0-9a-zA-Z-]+)*))?$", "title": "aind_behavior_services package version", "type": "string" @@ -611,7 +611,7 @@ "title": "Rng Seed" }, "aind_behavior_services_pkg_version": { - "default": "0.12.2", + "default": "0.12.3", "pattern": "^(0|[1-9]\\d*)\\.(0|[1-9]\\d*)\\.(0|[1-9]\\d*)(?:-((?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\\.(?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\\+([0-9a-zA-Z-]+(?:\\.[0-9a-zA-Z-]+)*))?$", "title": "aind_behavior_services package version", "type": "string" @@ -917,16 +917,6 @@ "type": "object" }, "BlockEndCondition": { - "discriminator": { - "mapping": { - "Choice": "#/$defs/BlockEndConditionChoice", - "Distance": "#/$defs/BlockEndConditionDistance", - "Duration": "#/$defs/BlockEndConditionDuration", - "PatchCount": "#/$defs/BlockEndConditionPatchCount", - "Reward": "#/$defs/BlockEndConditionReward" - }, - "propertyName": "condition_type" - }, "oneOf": [ { "$ref": "#/$defs/BlockEndConditionDuration" @@ -3376,16 +3366,6 @@ "type": "object" }, "PatchTerminator": { - "discriminator": { - "mapping": { - "OnChoice": "#/$defs/PatchTerminatorOnChoice", - "OnDistance": "#/$defs/PatchTerminatorOnDistance", - "OnRejection": "#/$defs/PatchTerminatorOnRejection", - "OnReward": "#/$defs/PatchTerminatorOnReward", - "OnTime": "#/$defs/PatchTerminatorOnTime" - }, - "propertyName": "terminator_type" - }, "oneOf": [ { "$ref": "#/$defs/PatchTerminatorOnRejection" @@ -3945,15 +3925,6 @@ "type": "object" }, "RewardFunction": { - "discriminator": { - "mapping": { - "OnThisPatchEntryRewardFunction": "#/$defs/OnThisPatchEntryRewardFunction", - "OutsideRewardFunction": "#/$defs/OutsideRewardFunction", - "PatchRewardFunction": "#/$defs/PatchRewardFunction", - "PersistentRewardFunction": "#/$defs/PersistentRewardFunction" - }, - "propertyName": "function_type" - }, "oneOf": [ { "$ref": "#/$defs/PatchRewardFunction" @@ -4997,8 +4968,18 @@ "type": "object" }, "TruncationParameters": { - "description": "Parameters for truncating a distribution to a specified range. Truncation should\nbe applied after sampling and scaling.\n\nUsed to constrain sampled values within minimum and maximum bounds.", + "description": "Parameters for truncating a distribution to a specified range. Truncation should\nbe applied after sampling and scaling.\n\nThe truncation_mode determines how out-of-bounds values are handled:\n- \"exclude\": Resample until a value within [min, max] is obtained.\nIf after a certain number of attempts no valid value is found, it\nwill use the average of sampled values and pick the closest bound.\n- \"clamp\": Clamp values to the nearest bound within [min, max].\nUsed to constrain sampled values within minimum and maximum bounds.", "properties": { + "truncation_mode": { + "default": "exclude", + "description": "Mode of truncation to apply", + "enum": [ + "exclude", + "clamp" + ], + "title": "Truncation Mode", + "type": "string" + }, "min": { "default": 0, "description": "Minimum value of the sampled distribution", @@ -5097,13 +5078,6 @@ "type": "string" }, "VideoWriter": { - "discriminator": { - "mapping": { - "FFMPEG": "#/$defs/VideoWriterFfmpeg", - "OPENCV": "#/$defs/VideoWriterOpenCv" - }, - "propertyName": "video_writer_type" - }, "oneOf": [ { "$ref": "#/$defs/VideoWriterFfmpeg" diff --git a/src/Extensions.csproj b/src/Extensions.csproj index 42f4b38d..fb3b6fb9 100644 --- a/src/Extensions.csproj +++ b/src/Extensions.csproj @@ -1,23 +1,25 @@ - net48 + + + net480 true - true + true - + - + - - + + - + \ No newline at end of file diff --git a/src/Extensions/AindBehaviorVrForaging.Generated.cs b/src/Extensions/AindBehaviorVrForaging.Generated.cs index 8eaf7f16..dfce6a7d 100644 --- a/src/Extensions/AindBehaviorVrForaging.Generated.cs +++ b/src/Extensions/AindBehaviorVrForaging.Generated.cs @@ -43,8 +43,8 @@ public partial class AindBehaviorSessionModel public AindBehaviorSessionModel() { - _aindBehaviorServicesPkgVersion = "0.12.2"; - _version = "0.12.2"; + _aindBehaviorServicesPkgVersion = "0.12.3"; + _version = "0.12.3"; _experimenter = new System.Collections.Generic.List(); _experimentVersion = ""; _allowDirtyRepo = false; @@ -954,7 +954,7 @@ public partial class AindVrForagingRig public AindVrForagingRig() { - _aindBehaviorServicesPkgVersion = "0.12.2"; + _aindBehaviorServicesPkgVersion = "0.12.3"; _version = "0.6.0-rc13"; _triggeredCameraController = new CameraControllerSpinnakerCamera(); _harpBehavior = new HarpBehavior(); @@ -1521,7 +1521,7 @@ public partial class AindVrForagingTaskParameters public AindVrForagingTaskParameters() { - _aindBehaviorServicesPkgVersion = "0.12.2"; + _aindBehaviorServicesPkgVersion = "0.12.3"; _environment = new BlockStructure(); _operationControl = new OperationControl(); } @@ -2488,12 +2488,12 @@ public partial class Block private EnvironmentStatistics _environmentStatistics; - private System.Collections.Generic.List _endConditions; + private System.Collections.Generic.List _endConditions; public Block() { _environmentStatistics = new EnvironmentStatistics(); - _endConditions = new System.Collections.Generic.List(); + _endConditions = new System.Collections.Generic.List(); } protected Block(Block other) @@ -2526,7 +2526,7 @@ public EnvironmentStatistics EnvironmentStatistics [System.Xml.Serialization.XmlIgnoreAttribute()] [Newtonsoft.Json.JsonPropertyAttribute("end_conditions")] [System.ComponentModel.DescriptionAttribute("List of end conditions that must be true for the block to end.")] - public System.Collections.Generic.List EndConditions + public System.Collections.Generic.List EndConditions { get { @@ -2570,20 +2570,7 @@ public override string ToString() } - /// - /// Block end condition based on time duration. - /// - ///This condition ends a block after a specified amount of time has elapsed. - /// [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.6.1.0 (Newtonsoft.Json v13.0.0.0)")] - [Newtonsoft.Json.JsonConverter(typeof(JsonInheritanceConverter), "condition_type")] - [JsonInheritanceAttribute("Duration", typeof(BlockEndConditionDuration))] - [JsonInheritanceAttribute("Distance", typeof(BlockEndConditionDistance))] - [JsonInheritanceAttribute("Choice", typeof(BlockEndConditionChoice))] - [JsonInheritanceAttribute("Reward", typeof(BlockEndConditionReward))] - [JsonInheritanceAttribute("PatchCount", typeof(BlockEndConditionPatchCount))] - [System.ComponentModel.DescriptionAttribute("Block end condition based on time duration.\n\nThis condition ends a block after a " + - "specified amount of time has elapsed.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class BlockEndCondition @@ -2639,21 +2626,37 @@ public override string ToString() "reward attempts).")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class BlockEndConditionChoice : BlockEndCondition + public partial class BlockEndConditionChoice { + private string _conditionType; + private Distribution _value; public BlockEndConditionChoice() { + _conditionType = "Choice"; } - protected BlockEndConditionChoice(BlockEndConditionChoice other) : - base(other) + protected BlockEndConditionChoice(BlockEndConditionChoice other) { + _conditionType = other._conditionType; _value = other._value; } + [Newtonsoft.Json.JsonPropertyAttribute("condition_type")] + public string ConditionType + { + get + { + return _conditionType; + } + set + { + _conditionType = value; + } + } + /// /// Number of choices after which the block ends. /// @@ -2682,15 +2685,25 @@ public System.IObservable Generate(System.IObs return System.Reactive.Linq.Observable.Select(source, _ => new BlockEndConditionChoice(this)); } - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } + stringBuilder.Append("ConditionType = " + _conditionType + ", "); stringBuilder.Append("Value = " + _value); return true; } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } } @@ -2704,21 +2717,37 @@ protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) "r the animal has traveled a specified distance.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class BlockEndConditionDistance : BlockEndCondition + public partial class BlockEndConditionDistance { + private string _conditionType; + private Distribution _value; public BlockEndConditionDistance() { + _conditionType = "Distance"; } - protected BlockEndConditionDistance(BlockEndConditionDistance other) : - base(other) + protected BlockEndConditionDistance(BlockEndConditionDistance other) { + _conditionType = other._conditionType; _value = other._value; } + [Newtonsoft.Json.JsonPropertyAttribute("condition_type")] + public string ConditionType + { + get + { + return _conditionType; + } + set + { + _conditionType = value; + } + } + /// /// Distance after which the block ends. /// @@ -2747,15 +2776,25 @@ public System.IObservable Generate(System.IO return System.Reactive.Linq.Observable.Select(source, _ => new BlockEndConditionDistance(this)); } - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } + stringBuilder.Append("ConditionType = " + _conditionType + ", "); stringBuilder.Append("Value = " + _value); return true; } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } } @@ -2769,21 +2808,37 @@ protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) "specified amount of time has elapsed.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class BlockEndConditionDuration : BlockEndCondition + public partial class BlockEndConditionDuration { + private string _conditionType; + private Distribution _value; public BlockEndConditionDuration() { + _conditionType = "Duration"; } - protected BlockEndConditionDuration(BlockEndConditionDuration other) : - base(other) + protected BlockEndConditionDuration(BlockEndConditionDuration other) { + _conditionType = other._conditionType; _value = other._value; } + [Newtonsoft.Json.JsonPropertyAttribute("condition_type")] + public string ConditionType + { + get + { + return _conditionType; + } + set + { + _conditionType = value; + } + } + /// /// Time after which the block ends. /// @@ -2812,15 +2867,25 @@ public System.IObservable Generate(System.IO return System.Reactive.Linq.Observable.Select(source, _ => new BlockEndConditionDuration(this)); } - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } + stringBuilder.Append("ConditionType = " + _conditionType + ", "); stringBuilder.Append("Value = " + _value); return true; } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } } @@ -2835,21 +2900,37 @@ protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) "ock after the animal has visited a specified\nnumber of unique patches.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class BlockEndConditionPatchCount : BlockEndCondition + public partial class BlockEndConditionPatchCount { + private string _conditionType; + private Distribution _value; public BlockEndConditionPatchCount() { + _conditionType = "PatchCount"; } - protected BlockEndConditionPatchCount(BlockEndConditionPatchCount other) : - base(other) + protected BlockEndConditionPatchCount(BlockEndConditionPatchCount other) { + _conditionType = other._conditionType; _value = other._value; } + [Newtonsoft.Json.JsonPropertyAttribute("condition_type")] + public string ConditionType + { + get + { + return _conditionType; + } + set + { + _conditionType = value; + } + } + /// /// Number of patches after which the block will end. /// @@ -2878,15 +2959,25 @@ public System.IObservable Generate(System. return System.Reactive.Linq.Observable.Select(source, _ => new BlockEndConditionPatchCount(this)); } - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } + stringBuilder.Append("ConditionType = " + _conditionType + ", "); stringBuilder.Append("Value = " + _value); return true; } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } } @@ -2901,21 +2992,37 @@ protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) "lock after the animal has obtained a specified\nnumber of rewards.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class BlockEndConditionReward : BlockEndCondition + public partial class BlockEndConditionReward { + private string _conditionType; + private Distribution _value; public BlockEndConditionReward() { + _conditionType = "Reward"; } - protected BlockEndConditionReward(BlockEndConditionReward other) : - base(other) + protected BlockEndConditionReward(BlockEndConditionReward other) { + _conditionType = other._conditionType; _value = other._value; } + [Newtonsoft.Json.JsonPropertyAttribute("condition_type")] + public string ConditionType + { + get + { + return _conditionType; + } + set + { + _conditionType = value; + } + } + /// /// Number of rewards after which the block ends. /// @@ -2944,15 +3051,25 @@ public System.IObservable Generate(System.IObs return System.Reactive.Linq.Observable.Select(source, _ => new BlockEndConditionReward(this)); } - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } + stringBuilder.Append("ConditionType = " + _conditionType + ", "); stringBuilder.Append("Value = " + _value); return true; } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } } @@ -8197,9 +8314,11 @@ public enum OlfactometerChannelType [System.ComponentModel.DescriptionAttribute("A RewardFunction that is applied when the animal enters the patch.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class OnThisPatchEntryRewardFunction : RewardFunction + public partial class OnThisPatchEntryRewardFunction { + private string _functionType; + private PatchUpdateFunction _amount; private PatchUpdateFunction _probability; @@ -8210,18 +8329,32 @@ public partial class OnThisPatchEntryRewardFunction : RewardFunction public OnThisPatchEntryRewardFunction() { + _functionType = "OnThisPatchEntryRewardFunction"; _rule = "OnThisPatchEntry"; } - protected OnThisPatchEntryRewardFunction(OnThisPatchEntryRewardFunction other) : - base(other) + protected OnThisPatchEntryRewardFunction(OnThisPatchEntryRewardFunction other) { + _functionType = other._functionType; _amount = other._amount; _probability = other._probability; _available = other._available; _rule = other._rule; } + [Newtonsoft.Json.JsonPropertyAttribute("function_type")] + public string FunctionType + { + get + { + return _functionType; + } + set + { + _functionType = value; + } + } + /// /// Defines the amount of reward replenished per rule unit. /// @@ -8303,18 +8436,28 @@ public System.IObservable Generate(Syst return System.Reactive.Linq.Observable.Select(source, _ => new OnThisPatchEntryRewardFunction(this)); } - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } + stringBuilder.Append("FunctionType = " + _functionType + ", "); stringBuilder.Append("Amount = " + _amount + ", "); stringBuilder.Append("Probability = " + _probability + ", "); stringBuilder.Append("Available = " + _available + ", "); stringBuilder.Append("Rule = " + _rule); return true; } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } } @@ -8615,9 +8758,11 @@ public override string ToString() [System.ComponentModel.DescriptionAttribute("A RewardFunction that is applied when the animal is outside of the patch.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class OutsideRewardFunction : RewardFunction + public partial class OutsideRewardFunction { + private string _functionType; + private PatchUpdateFunction _amount; private PatchUpdateFunction _probability; @@ -8630,13 +8775,14 @@ public partial class OutsideRewardFunction : RewardFunction public OutsideRewardFunction() { + _functionType = "OutsideRewardFunction"; _rule = AindVrForagingDataSchema.OutsideRewardFunctionRule.OnTime; _delay = 0D; } - protected OutsideRewardFunction(OutsideRewardFunction other) : - base(other) + protected OutsideRewardFunction(OutsideRewardFunction other) { + _functionType = other._functionType; _amount = other._amount; _probability = other._probability; _available = other._available; @@ -8644,6 +8790,19 @@ protected OutsideRewardFunction(OutsideRewardFunction other) : _delay = other._delay; } + [Newtonsoft.Json.JsonPropertyAttribute("function_type")] + public string FunctionType + { + get + { + return _functionType; + } + set + { + _functionType = value; + } + } + /// /// Defines the amount of reward replenished per rule unit. /// @@ -8743,12 +8902,9 @@ public System.IObservable Generate(System.IObser return System.Reactive.Linq.Observable.Select(source, _ => new OutsideRewardFunction(this)); } - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } + stringBuilder.Append("FunctionType = " + _functionType + ", "); stringBuilder.Append("Amount = " + _amount + ", "); stringBuilder.Append("Probability = " + _probability + ", "); stringBuilder.Append("Available = " + _available + ", "); @@ -8756,6 +8912,19 @@ protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) stringBuilder.Append("Delay = " + _delay); return true; } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } } @@ -8779,7 +8948,7 @@ public partial class Patch private PatchVirtualSitesGenerator _patchVirtualSitesGenerator; - private System.Collections.Generic.List _patchTerminators; + private System.Collections.Generic.List _patchTerminators; public Patch() { @@ -8787,7 +8956,7 @@ public Patch() _stateIndex = 0; _rewardSpecification = new RewardSpecification(); _patchVirtualSitesGenerator = new PatchVirtualSitesGenerator(); - _patchTerminators = new System.Collections.Generic.List(); + _patchTerminators = new System.Collections.Generic.List(); } protected Patch(Patch other) @@ -8894,7 +9063,7 @@ public PatchVirtualSitesGenerator PatchVirtualSitesGenerator [System.Xml.Serialization.XmlIgnoreAttribute()] [Newtonsoft.Json.JsonPropertyAttribute("patch_terminators")] [System.ComponentModel.DescriptionAttribute("The optional termination specification of the patch")] - public System.Collections.Generic.List PatchTerminators + public System.Collections.Generic.List PatchTerminators { get { @@ -8951,9 +9120,11 @@ public override string ToString() "poses of this function post-patch and inter-patch are excluded.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class PatchRewardFunction : RewardFunction + public partial class PatchRewardFunction { + private string _functionType; + private PatchUpdateFunction _amount; private PatchUpdateFunction _probability; @@ -8964,18 +9135,32 @@ public partial class PatchRewardFunction : RewardFunction public PatchRewardFunction() { + _functionType = "PatchRewardFunction"; _rule = AindVrForagingDataSchema.PatchRewardFunctionRule.OnReward; } - protected PatchRewardFunction(PatchRewardFunction other) : - base(other) + protected PatchRewardFunction(PatchRewardFunction other) { + _functionType = other._functionType; _amount = other._amount; _probability = other._probability; _available = other._available; _rule = other._rule; } + [Newtonsoft.Json.JsonPropertyAttribute("function_type")] + public string FunctionType + { + get + { + return _functionType; + } + set + { + _functionType = value; + } + } + /// /// Defines the amount of reward replenished per rule unit. /// @@ -9058,33 +9243,32 @@ public System.IObservable Generate(System.IObserva return System.Reactive.Linq.Observable.Select(source, _ => new PatchRewardFunction(this)); } - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } + stringBuilder.Append("FunctionType = " + _functionType + ", "); stringBuilder.Append("Amount = " + _amount + ", "); stringBuilder.Append("Probability = " + _probability + ", "); stringBuilder.Append("Available = " + _available + ", "); stringBuilder.Append("Rule = " + _rule); return true; } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } } - /// - /// Terminates the patch after a reward site where the animal does not stop in "count" reward sites. - /// [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.6.1.0 (Newtonsoft.Json v13.0.0.0)")] - [Newtonsoft.Json.JsonConverter(typeof(JsonInheritanceConverter), "terminator_type")] - [JsonInheritanceAttribute("OnRejection", typeof(PatchTerminatorOnRejection))] - [JsonInheritanceAttribute("OnChoice", typeof(PatchTerminatorOnChoice))] - [JsonInheritanceAttribute("OnReward", typeof(PatchTerminatorOnReward))] - [JsonInheritanceAttribute("OnTime", typeof(PatchTerminatorOnTime))] - [JsonInheritanceAttribute("OnDistance", typeof(PatchTerminatorOnDistance))] - [System.ComponentModel.DescriptionAttribute("Terminates the patch after a reward site where the animal does not stop in \"count" + - "\" reward sites.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class PatchTerminator @@ -9135,24 +9319,40 @@ public override string ToString() [System.ComponentModel.DescriptionAttribute("Terminates the patch after \"count\" choices.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class PatchTerminatorOnChoice : PatchTerminator + public partial class PatchTerminatorOnChoice { + private string _terminatorType; + private Distribution _count; public PatchTerminatorOnChoice() { + _terminatorType = "OnChoice"; _count = new Distribution(); } - protected PatchTerminatorOnChoice(PatchTerminatorOnChoice other) : - base(other) + protected PatchTerminatorOnChoice(PatchTerminatorOnChoice other) { + _terminatorType = other._terminatorType; _count = other._count; } - /// - /// Number of choices the animal must make to terminate the patch + [Newtonsoft.Json.JsonPropertyAttribute("terminator_type")] + public string TerminatorType + { + get + { + return _terminatorType; + } + set + { + _terminatorType = value; + } + } + + /// + /// Number of choices the animal must make to terminate the patch /// [System.Xml.Serialization.XmlIgnoreAttribute()] [Newtonsoft.Json.JsonPropertyAttribute("count")] @@ -9179,15 +9379,25 @@ public System.IObservable Generate(System.IObs return System.Reactive.Linq.Observable.Select(source, _ => new PatchTerminatorOnChoice(this)); } - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } + stringBuilder.Append("TerminatorType = " + _terminatorType + ", "); stringBuilder.Append("Count = " + _count); return true; } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } } @@ -9198,21 +9408,37 @@ protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) [System.ComponentModel.DescriptionAttribute("Terminates the patch after a \"count\" distance.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class PatchTerminatorOnDistance : PatchTerminator + public partial class PatchTerminatorOnDistance { + private string _terminatorType; + private Distribution _count; public PatchTerminatorOnDistance() { + _terminatorType = "OnDistance"; } - protected PatchTerminatorOnDistance(PatchTerminatorOnDistance other) : - base(other) + protected PatchTerminatorOnDistance(PatchTerminatorOnDistance other) { + _terminatorType = other._terminatorType; _count = other._count; } + [Newtonsoft.Json.JsonPropertyAttribute("terminator_type")] + public string TerminatorType + { + get + { + return _terminatorType; + } + set + { + _terminatorType = value; + } + } + /// /// Number of distance units to wait before terminating the patch /// @@ -9241,15 +9467,25 @@ public System.IObservable Generate(System.IO return System.Reactive.Linq.Observable.Select(source, _ => new PatchTerminatorOnDistance(this)); } - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } + stringBuilder.Append("TerminatorType = " + _terminatorType + ", "); stringBuilder.Append("Count = " + _count); return true; } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } } @@ -9261,22 +9497,38 @@ protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) "\" reward sites.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class PatchTerminatorOnRejection : PatchTerminator + public partial class PatchTerminatorOnRejection { + private string _terminatorType; + private Distribution _count; public PatchTerminatorOnRejection() { + _terminatorType = "OnRejection"; _count = new Distribution(); } - protected PatchTerminatorOnRejection(PatchTerminatorOnRejection other) : - base(other) + protected PatchTerminatorOnRejection(PatchTerminatorOnRejection other) { + _terminatorType = other._terminatorType; _count = other._count; } + [Newtonsoft.Json.JsonPropertyAttribute("terminator_type")] + public string TerminatorType + { + get + { + return _terminatorType; + } + set + { + _terminatorType = value; + } + } + /// /// Number of reward sites the animal must not stop in to terminate the patch /// @@ -9305,15 +9557,25 @@ public System.IObservable Generate(System.I return System.Reactive.Linq.Observable.Select(source, _ => new PatchTerminatorOnRejection(this)); } - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } + stringBuilder.Append("TerminatorType = " + _terminatorType + ", "); stringBuilder.Append("Count = " + _count); return true; } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } } @@ -9324,22 +9586,38 @@ protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) [System.ComponentModel.DescriptionAttribute("Terminates the patch after \"count\" rewards.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class PatchTerminatorOnReward : PatchTerminator + public partial class PatchTerminatorOnReward { + private string _terminatorType; + private Distribution _count; public PatchTerminatorOnReward() { + _terminatorType = "OnReward"; _count = new Distribution(); } - protected PatchTerminatorOnReward(PatchTerminatorOnReward other) : - base(other) + protected PatchTerminatorOnReward(PatchTerminatorOnReward other) { + _terminatorType = other._terminatorType; _count = other._count; } + [Newtonsoft.Json.JsonPropertyAttribute("terminator_type")] + public string TerminatorType + { + get + { + return _terminatorType; + } + set + { + _terminatorType = value; + } + } + /// /// Number of rewards the animal must collect to terminate the patch /// @@ -9368,15 +9646,25 @@ public System.IObservable Generate(System.IObs return System.Reactive.Linq.Observable.Select(source, _ => new PatchTerminatorOnReward(this)); } - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } + stringBuilder.Append("TerminatorType = " + _terminatorType + ", "); stringBuilder.Append("Count = " + _count); return true; } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } } @@ -9387,21 +9675,37 @@ protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) [System.ComponentModel.DescriptionAttribute("Terminates the patch after a \"count\" seconds.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class PatchTerminatorOnTime : PatchTerminator + public partial class PatchTerminatorOnTime { + private string _terminatorType; + private Distribution _count; public PatchTerminatorOnTime() { + _terminatorType = "OnTime"; } - protected PatchTerminatorOnTime(PatchTerminatorOnTime other) : - base(other) + protected PatchTerminatorOnTime(PatchTerminatorOnTime other) { + _terminatorType = other._terminatorType; _count = other._count; } + [Newtonsoft.Json.JsonPropertyAttribute("terminator_type")] + public string TerminatorType + { + get + { + return _terminatorType; + } + set + { + _terminatorType = value; + } + } + /// /// Number of seconds to wait before terminating the patch /// @@ -9430,15 +9734,25 @@ public System.IObservable Generate(System.IObser return System.Reactive.Linq.Observable.Select(source, _ => new PatchTerminatorOnTime(this)); } - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } + stringBuilder.Append("TerminatorType = " + _terminatorType + ", "); stringBuilder.Append("Count = " + _count); return true; } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } } @@ -9889,9 +10203,11 @@ public override string ToString() [System.ComponentModel.DescriptionAttribute("A RewardFunction that is always active.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class PersistentRewardFunction : RewardFunction + public partial class PersistentRewardFunction { + private string _functionType; + private PatchUpdateFunction _amount; private PatchUpdateFunction _probability; @@ -9902,17 +10218,31 @@ public partial class PersistentRewardFunction : RewardFunction public PersistentRewardFunction() { + _functionType = "PersistentRewardFunction"; } - protected PersistentRewardFunction(PersistentRewardFunction other) : - base(other) + protected PersistentRewardFunction(PersistentRewardFunction other) { + _functionType = other._functionType; _amount = other._amount; _probability = other._probability; _available = other._available; _rule = other._rule; } + [Newtonsoft.Json.JsonPropertyAttribute("function_type")] + public string FunctionType + { + get + { + return _functionType; + } + set + { + _functionType = value; + } + } + /// /// Defines the amount of reward replenished per rule unit. /// @@ -9991,18 +10321,28 @@ public System.IObservable Generate(System.IOb return System.Reactive.Linq.Observable.Select(source, _ => new PersistentRewardFunction(this)); } - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } + stringBuilder.Append("FunctionType = " + _functionType + ", "); stringBuilder.Append("Amount = " + _amount + ", "); stringBuilder.Append("Probability = " + _probability + ", "); stringBuilder.Append("Available = " + _available + ", "); stringBuilder.Append("Rule = " + _rule); return true; } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } } @@ -10565,11 +10905,6 @@ public override string ToString() [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.6.1.0 (Newtonsoft.Json v13.0.0.0)")] - [Newtonsoft.Json.JsonConverter(typeof(JsonInheritanceConverter), "function_type")] - [JsonInheritanceAttribute("PatchRewardFunction", typeof(PatchRewardFunction))] - [JsonInheritanceAttribute("OnThisPatchEntryRewardFunction", typeof(OnThisPatchEntryRewardFunction))] - [JsonInheritanceAttribute("OutsideRewardFunction", typeof(OutsideRewardFunction))] - [JsonInheritanceAttribute("PersistentRewardFunction", typeof(PersistentRewardFunction))] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class RewardFunction @@ -10641,7 +10976,7 @@ public partial class RewardSpecification private Distribution _available; - private System.Collections.Generic.List _rewardFunction; + private System.Collections.Generic.List _rewardFunction; public RewardSpecification() { @@ -10649,7 +10984,7 @@ public RewardSpecification() _amount = new Distribution(); _probability = new Distribution(); _available = new Distribution(); - _rewardFunction = new System.Collections.Generic.List(); + _rewardFunction = new System.Collections.Generic.List(); } protected RewardSpecification(RewardSpecification other) @@ -10758,7 +11093,7 @@ public Distribution Available [System.Xml.Serialization.XmlIgnoreAttribute()] [Newtonsoft.Json.JsonPropertyAttribute("reward_function")] [System.ComponentModel.DescriptionAttribute("Reward function of the patch")] - public System.Collections.Generic.List RewardFunction + public System.Collections.Generic.List RewardFunction { get { @@ -11632,7 +11967,7 @@ public partial class SpinnakerCamera private Rect _regionOfInterest; - private VideoWriter _videoWriter; + private VideoWriter2 _videoWriter; public SpinnakerCamera() { @@ -11898,7 +12233,7 @@ public Rect RegionOfInterest [System.Xml.Serialization.XmlIgnoreAttribute()] [Newtonsoft.Json.JsonPropertyAttribute("video_writer")] [System.ComponentModel.DescriptionAttribute("Video writer. If not provided, no video will be saved.")] - public VideoWriter VideoWriter + public VideoWriter2 VideoWriter { get { @@ -13113,33 +13448,66 @@ public override string ToString() /// Parameters for truncating a distribution to a specified range. Truncation should ///be applied after sampling and scaling. /// + ///The truncation_mode determines how out-of-bounds values are handled: + ///- "exclude": Resample until a value within [min, max] is obtained. + ///If after a certain number of attempts no valid value is found, it + ///will use the average of sampled values and pick the closest bound. + ///- "clamp": Clamp values to the nearest bound within [min, max]. ///Used to constrain sampled values within minimum and maximum bounds. /// [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.6.1.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DescriptionAttribute("Parameters for truncating a distribution to a specified range. Truncation should\n" + - "be applied after sampling and scaling.\n\nUsed to constrain sampled values within " + - "minimum and maximum bounds.")] + [System.ComponentModel.DescriptionAttribute(@"Parameters for truncating a distribution to a specified range. Truncation should + be applied after sampling and scaling. + + The truncation_mode determines how out-of-bounds values are handled: + - ""exclude"": Resample until a value within [min, max] is obtained. + If after a certain number of attempts no valid value is found, it + will use the average of sampled values and pick the closest bound. + - ""clamp"": Clamp values to the nearest bound within [min, max]. + Used to constrain sampled values within minimum and maximum bounds.")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class TruncationParameters { + private TruncationParametersTruncationMode _truncationMode; + private double _min; private double _max; public TruncationParameters() { + _truncationMode = AindVrForagingDataSchema.TruncationParametersTruncationMode.Exclude; _min = 0D; _max = 0D; } protected TruncationParameters(TruncationParameters other) { + _truncationMode = other._truncationMode; _min = other._min; _max = other._max; } + /// + /// Mode of truncation to apply + /// + [System.Xml.Serialization.XmlIgnoreAttribute()] + [Newtonsoft.Json.JsonPropertyAttribute("truncation_mode")] + [System.ComponentModel.DescriptionAttribute("Mode of truncation to apply")] + public TruncationParametersTruncationMode TruncationMode + { + get + { + return _truncationMode; + } + set + { + _truncationMode = value; + } + } + /// /// Minimum value of the sampled distribution /// @@ -13186,6 +13554,7 @@ public System.IObservable Generate(System.IObserv protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { + stringBuilder.Append("TruncationMode = " + _truncationMode + ", "); stringBuilder.Append("Min = " + _min + ", "); stringBuilder.Append("Max = " + _max); return true; @@ -13452,9 +13821,6 @@ public enum UpdaterTarget [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.6.1.0 (Newtonsoft.Json v13.0.0.0)")] - [Newtonsoft.Json.JsonConverter(typeof(JsonInheritanceConverter), "video_writer_type")] - [JsonInheritanceAttribute("FFMPEG", typeof(VideoWriterFfmpeg))] - [JsonInheritanceAttribute("OPENCV", typeof(VideoWriterOpenCv))] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] public partial class VideoWriter @@ -13501,9 +13867,11 @@ public override string ToString() [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.6.1.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class VideoWriterFfmpeg : VideoWriter + public partial class VideoWriterFfmpeg { + private string _videoWriterType; + private int _frameRate; private string _containerExtension; @@ -13514,21 +13882,35 @@ public partial class VideoWriterFfmpeg : VideoWriter public VideoWriterFfmpeg() { + _videoWriterType = "FFMPEG"; _frameRate = 30; _containerExtension = "mp4"; _outputArguments = "-vf \"scale=out_color_matrix=bt709:out_range=full,format=bgr24,scale=out_range=full\" -c:v h264_nvenc -pix_fmt yuv420p -color_range full -colorspace bt709 -color_trc linear -tune hq -preset p4 -rc vbr -cq 12 -b:v 0M -metadata author=\"Allen Institute for Neural Dynamics\" -maxrate 700M -bufsize 350M"; _inputArguments = "-colorspace bt709 -color_primaries bt709 -color_range full -color_trc linear"; } - protected VideoWriterFfmpeg(VideoWriterFfmpeg other) : - base(other) + protected VideoWriterFfmpeg(VideoWriterFfmpeg other) { + _videoWriterType = other._videoWriterType; _frameRate = other._frameRate; _containerExtension = other._containerExtension; _outputArguments = other._outputArguments; _inputArguments = other._inputArguments; } + [Newtonsoft.Json.JsonPropertyAttribute("video_writer_type")] + public string VideoWriterType + { + get + { + return _videoWriterType; + } + set + { + _videoWriterType = value; + } + } + /// /// Encoding frame rate /// @@ -13607,27 +13989,39 @@ public System.IObservable Generate(System.IObservabl return System.Reactive.Linq.Observable.Select(source, _ => new VideoWriterFfmpeg(this)); } - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } + stringBuilder.Append("VideoWriterType = " + _videoWriterType + ", "); stringBuilder.Append("FrameRate = " + _frameRate + ", "); stringBuilder.Append("ContainerExtension = " + _containerExtension + ", "); stringBuilder.Append("OutputArguments = " + _outputArguments + ", "); stringBuilder.Append("InputArguments = " + _inputArguments); return true; } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } } [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.6.1.0 (Newtonsoft.Json v13.0.0.0)")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] [Bonsai.CombinatorAttribute(MethodName="Generate")] - public partial class VideoWriterOpenCv : VideoWriter + public partial class VideoWriterOpenCv { + private string _videoWriterType; + private int _frameRate; private string _containerExtension; @@ -13636,19 +14030,33 @@ public partial class VideoWriterOpenCv : VideoWriter public VideoWriterOpenCv() { + _videoWriterType = "OPENCV"; _frameRate = 30; _containerExtension = "avi"; _fourCc = "FMP4"; } - protected VideoWriterOpenCv(VideoWriterOpenCv other) : - base(other) + protected VideoWriterOpenCv(VideoWriterOpenCv other) { + _videoWriterType = other._videoWriterType; _frameRate = other._frameRate; _containerExtension = other._containerExtension; _fourCc = other._fourCc; } + [Newtonsoft.Json.JsonPropertyAttribute("video_writer_type")] + public string VideoWriterType + { + get + { + return _videoWriterType; + } + set + { + _videoWriterType = value; + } + } + /// /// Encoding frame rate /// @@ -13710,17 +14118,27 @@ public System.IObservable Generate(System.IObservabl return System.Reactive.Linq.Observable.Select(source, _ => new VideoWriterOpenCv(this)); } - protected override bool PrintMembers(System.Text.StringBuilder stringBuilder) + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) { - if (base.PrintMembers(stringBuilder)) - { - stringBuilder.Append(", "); - } + stringBuilder.Append("VideoWriterType = " + _videoWriterType + ", "); stringBuilder.Append("FrameRate = " + _frameRate + ", "); stringBuilder.Append("ContainerExtension = " + _containerExtension + ", "); stringBuilder.Append("FourCc = " + _fourCc); return true; } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } } @@ -14855,7 +15273,7 @@ public partial class WebCamera private int _index; - private VideoWriter _videoWriter; + private VideoWriter3 _videoWriter; public WebCamera() { @@ -14966,7 +15384,7 @@ public int Index [System.Xml.Serialization.XmlIgnoreAttribute()] [Newtonsoft.Json.JsonPropertyAttribute("video_writer")] [System.ComponentModel.DescriptionAttribute("Video writer. If not provided, no video will be saved.")] - public VideoWriter VideoWriter + public VideoWriter3 VideoWriter { get { @@ -15768,6 +16186,107 @@ public enum SpinnakerCameraColorProcessing } + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.6.1.0 (Newtonsoft.Json v13.0.0.0)")] + [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] + [Bonsai.CombinatorAttribute(MethodName="Generate")] + public partial class VideoWriter2 + { + + public VideoWriter2() + { + } + + protected VideoWriter2(VideoWriter2 other) + { + } + + public System.IObservable Generate() + { + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new VideoWriter2(this))); + } + + public System.IObservable Generate(System.IObservable source) + { + return System.Reactive.Linq.Observable.Select(source, _ => new VideoWriter2(this)); + } + + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) + { + return false; + } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } + } + + + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.6.1.0 (Newtonsoft.Json v13.0.0.0)")] + [Newtonsoft.Json.JsonConverter(typeof(Newtonsoft.Json.Converters.StringEnumConverter))] + public enum TruncationParametersTruncationMode + { + + [System.Runtime.Serialization.EnumMemberAttribute(Value="exclude")] + Exclude = 0, + + [System.Runtime.Serialization.EnumMemberAttribute(Value="clamp")] + Clamp = 1, + } + + + [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.6.1.0 (Newtonsoft.Json v13.0.0.0)")] + [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Source)] + [Bonsai.CombinatorAttribute(MethodName="Generate")] + public partial class VideoWriter3 + { + + public VideoWriter3() + { + } + + protected VideoWriter3(VideoWriter3 other) + { + } + + public System.IObservable Generate() + { + return System.Reactive.Linq.Observable.Defer(() => System.Reactive.Linq.Observable.Return(new VideoWriter3(this))); + } + + public System.IObservable Generate(System.IObservable source) + { + return System.Reactive.Linq.Observable.Select(source, _ => new VideoWriter3(this)); + } + + protected virtual bool PrintMembers(System.Text.StringBuilder stringBuilder) + { + return false; + } + + public override string ToString() + { + System.Text.StringBuilder stringBuilder = new System.Text.StringBuilder(); + stringBuilder.Append(GetType().Name); + stringBuilder.Append(" { "); + if (PrintMembers(stringBuilder)) + { + stringBuilder.Append(" "); + } + stringBuilder.Append("}"); + return stringBuilder.ToString(); + } + } + + [System.CodeDom.Compiler.GeneratedCode("NJsonSchema", "10.9.0.0 (Newtonsoft.Json v13.0.0.0)")] [System.AttributeUsage(System.AttributeTargets.Class | System.AttributeTargets.Interface, AllowMultiple = true)] internal class JsonInheritanceAttribute : System.Attribute @@ -15905,50 +16424,6 @@ private string GetSubtypeDiscriminator(System.Type objectType) } } - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.6.1.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DefaultPropertyAttribute("Type")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Combinator)] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - public partial class MatchBlockEndCondition : Bonsai.Expressions.SingleArgumentExpressionBuilder - { - - public Bonsai.Expressions.TypeMapping Type { get; set; } - - public override System.Linq.Expressions.Expression Build(System.Collections.Generic.IEnumerable arguments) - { - var typeMapping = Type; - var returnType = typeMapping != null ? typeMapping.GetType().GetGenericArguments()[0] : typeof(BlockEndCondition); - return System.Linq.Expressions.Expression.Call( - typeof(MatchBlockEndCondition), - "Process", - new System.Type[] { returnType }, - System.Linq.Enumerable.Single(arguments)); - } - - - private static System.IObservable Process(System.IObservable source) - where TResult : BlockEndCondition - { - return System.Reactive.Linq.Observable.Create(observer => - { - var sourceObserver = System.Reactive.Observer.Create( - value => - { - var match = value as TResult; - if (match != null) observer.OnNext(match); - }, - observer.OnError, - observer.OnCompleted); - return System.ObservableExtensions.SubscribeSafe(source, sourceObserver); - }); - } - } - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.6.1.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DefaultPropertyAttribute("Type")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Combinator)] @@ -15998,50 +16473,6 @@ private static System.IObservable Process(System.IObservable))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - public partial class MatchPatchTerminator : Bonsai.Expressions.SingleArgumentExpressionBuilder - { - - public Bonsai.Expressions.TypeMapping Type { get; set; } - - public override System.Linq.Expressions.Expression Build(System.Collections.Generic.IEnumerable arguments) - { - var typeMapping = Type; - var returnType = typeMapping != null ? typeMapping.GetType().GetGenericArguments()[0] : typeof(PatchTerminator); - return System.Linq.Expressions.Expression.Call( - typeof(MatchPatchTerminator), - "Process", - new System.Type[] { returnType }, - System.Linq.Enumerable.Single(arguments)); - } - - - private static System.IObservable Process(System.IObservable source) - where TResult : PatchTerminator - { - return System.Reactive.Linq.Observable.Create(observer => - { - var sourceObserver = System.Reactive.Observer.Create( - value => - { - var match = value as TResult; - if (match != null) observer.OnNext(match); - }, - observer.OnError, - observer.OnCompleted); - return System.ObservableExtensions.SubscribeSafe(source, sourceObserver); - }); - } - } - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.6.1.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DefaultPropertyAttribute("Type")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Combinator)] @@ -16086,90 +16517,6 @@ private static System.IObservable Process(System.IObservable

))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - public partial class MatchRewardFunction : Bonsai.Expressions.SingleArgumentExpressionBuilder - { - - public Bonsai.Expressions.TypeMapping Type { get; set; } - - public override System.Linq.Expressions.Expression Build(System.Collections.Generic.IEnumerable arguments) - { - var typeMapping = Type; - var returnType = typeMapping != null ? typeMapping.GetType().GetGenericArguments()[0] : typeof(RewardFunction); - return System.Linq.Expressions.Expression.Call( - typeof(MatchRewardFunction), - "Process", - new System.Type[] { returnType }, - System.Linq.Enumerable.Single(arguments)); - } - - - private static System.IObservable Process(System.IObservable source) - where TResult : RewardFunction - { - return System.Reactive.Linq.Observable.Create(observer => - { - var sourceObserver = System.Reactive.Observer.Create( - value => - { - var match = value as TResult; - if (match != null) observer.OnNext(match); - }, - observer.OnError, - observer.OnCompleted); - return System.ObservableExtensions.SubscribeSafe(source, sourceObserver); - }); - } - } - - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.6.1.0 (Newtonsoft.Json v13.0.0.0)")] - [System.ComponentModel.DefaultPropertyAttribute("Type")] - [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Combinator)] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] - public partial class MatchVideoWriter : Bonsai.Expressions.SingleArgumentExpressionBuilder - { - - public Bonsai.Expressions.TypeMapping Type { get; set; } - - public override System.Linq.Expressions.Expression Build(System.Collections.Generic.IEnumerable arguments) - { - var typeMapping = Type; - var returnType = typeMapping != null ? typeMapping.GetType().GetGenericArguments()[0] : typeof(VideoWriter); - return System.Linq.Expressions.Expression.Call( - typeof(MatchVideoWriter), - "Process", - new System.Type[] { returnType }, - System.Linq.Enumerable.Single(arguments)); - } - - - private static System.IObservable Process(System.IObservable source) - where TResult : VideoWriter - { - return System.Reactive.Linq.Observable.Create(observer => - { - var sourceObserver = System.Reactive.Observer.Create( - value => - { - var match = value as TResult; - if (match != null) observer.OnNext(match); - }, - observer.OnError, - observer.OnCompleted); - return System.ObservableExtensions.SubscribeSafe(source, sourceObserver); - }); - } - } - - [System.CodeDom.Compiler.GeneratedCodeAttribute("Bonsai.Sgen", "0.6.1.0 (Newtonsoft.Json v13.0.0.0)")] [System.ComponentModel.DefaultPropertyAttribute("Type")] [Bonsai.WorkflowElementCategoryAttribute(Bonsai.ElementCategory.Combinator)] @@ -17090,6 +17437,16 @@ public System.IObservable Process(System.IObservable { return Process(source); } + + public System.IObservable Process(System.IObservable source) + { + return Process(source); + } + + public System.IObservable Process(System.IObservable source) + { + return Process(source); + } } @@ -17226,6 +17583,8 @@ public System.IObservable Process(System.IObservable [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] + [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] + [System.Xml.Serialization.XmlIncludeAttribute(typeof(Bonsai.Expressions.TypeMapping))] public partial class DeserializeFromJson : Bonsai.Expressions.SingleArgumentExpressionBuilder { diff --git a/src/Extensions/AindBehaviorVrForaging.cs b/src/Extensions/AindBehaviorVrForaging.cs index 2114c609..b7ad141b 100644 --- a/src/Extensions/AindBehaviorVrForaging.cs +++ b/src/Extensions/AindBehaviorVrForaging.cs @@ -6,8 +6,6 @@ using System.Reactive.Linq; using MathNet.Numerics.Distributions; using System.ComponentModel; -using MathNet.Numerics; -using MathNet.Numerics.Optimization; namespace AindVrForagingDataSchema { @@ -115,12 +113,7 @@ public virtual double SampleDistribution(Random random) throw new NotImplementedException(); } - public virtual IDiscreteDistribution GetDiscreteDistribution(Random random) - { - throw new NotImplementedException(); - } - - public virtual IContinuousDistribution GetContinuousDistribution(Random random) + public virtual IDistribution GetDistribution(Random random) { throw new NotImplementedException(); } @@ -130,64 +123,43 @@ private static double ApplyScaleAndOffset(double value, ScalingParameters scalin return scalingParameters == null ? value : value * scalingParameters.Scale + scalingParameters.Offset; } - public double DrawSample(IContinuousDistribution distribution, ScalingParameters scalingParameters, TruncationParameters truncationParameters) + public double DrawSample(IDistribution distribution, ScalingParameters scalingParameters, TruncationParameters truncationParameters) { - if (truncationParameters != null) - { - ValidateTruncationParameters(truncationParameters); - var samples = SampleFromDistribution(distribution, truncationParameters, scalingParameters); - return ValidateSamples(samples.Item1, samples.Item2, truncationParameters); - } - else + if (truncationParameters == null) { return ApplyScaleAndOffset(distribution.Sample(), scalingParameters); } - } - public double DrawSample(IDiscreteDistribution distribution, ScalingParameters scalingParameters, TruncationParameters truncationParameters) - { - if (truncationParameters != null) - { - ValidateTruncationParameters(truncationParameters); - var samples = SampleFromDistribution(distribution, truncationParameters, scalingParameters); - return ValidateSamples(samples.Item1, samples.Item2, truncationParameters); - } - else + ValidateTruncationParameters(truncationParameters); + + switch (truncationParameters.TruncationMode) { - return ApplyScaleAndOffset(distribution.Sample(), scalingParameters); + case TruncationParametersTruncationMode.Clamp: + var sample = ApplyScaleAndOffset(distribution.Sample(), scalingParameters); + return Math.Min(Math.Max(sample, truncationParameters.Min), truncationParameters.Max); + case TruncationParametersTruncationMode.Exclude: + double[] samples = new double[SampleSize]; + distribution.Samples(samples); + var scaledSamples = samples.Select(x => ApplyScaleAndOffset(x, scalingParameters)).ToArray(); + return ValidateTruncationExcludeMode(scaledSamples, truncationParameters); + default: + throw new ArgumentException("Invalid truncation mode."); } } - private Tuple SampleFromDistribution(IContinuousDistribution distribution, TruncationParameters truncationParameters, ScalingParameters scalingParameters) - { - double[] samples = new double[SampleSize]; - distribution.Samples(samples); - var scaledSamples = samples.Select(x => ApplyScaleAndOffset(x, scalingParameters)); - var average = scaledSamples.Average(); - var truncatedSamples = scaledSamples.Where(x => x >= truncationParameters.Min && x <= truncationParameters.Max); - return Tuple.Create(truncatedSamples.ToArray(), average); - } - - private Tuple SampleFromDistribution(IDiscreteDistribution distribution, TruncationParameters truncationParameters, ScalingParameters scalingParameters) - { - int[] samples = new int[SampleSize]; - distribution.Samples(samples); - var scaledSamples = samples.Select(x => ApplyScaleAndOffset(x, scalingParameters)); - var average = scaledSamples.Average(); - var truncatedSamples = scaledSamples.Where(x => x >= truncationParameters.Min && x <= truncationParameters.Max); - return Tuple.Create(truncatedSamples.ToArray(), average); - } - - private static double ValidateSamples(double[] drawnSamples, double preTruncatedAverage, TruncationParameters truncationParameters) + private static double ValidateTruncationExcludeMode(double[] drawnSamples, TruncationParameters truncationParameters) { double outValue; - if (drawnSamples.Count() <= 0) + var average = drawnSamples.Average(); + var truncatedSamples = drawnSamples.Where(x => x >= truncationParameters.Min && x <= truncationParameters.Max); + + if (truncatedSamples.Count() <= 0) { - if (preTruncatedAverage <= truncationParameters.Min) + if (average <= truncationParameters.Min) { outValue = truncationParameters.Min; } - else if (preTruncatedAverage >= truncationParameters.Max) + else if (average >= truncationParameters.Max) { outValue = truncationParameters.Max; } @@ -198,13 +170,14 @@ private static double ValidateSamples(double[] drawnSamples, double preTruncated } else { - outValue = drawnSamples.First(); + outValue = truncatedSamples.First(); } return outValue; } - private void ValidateTruncationParameters(TruncationParameters truncationParameters) + private static void ValidateTruncationParameters(TruncationParameters truncationParameters) { + if (truncationParameters == null) { return; } if (truncationParameters.Min > truncationParameters.Max) { throw new ArgumentException("Invalid truncation parameters. Min must be lower than Max"); @@ -248,120 +221,112 @@ public override double SampleDistribution(Random random) partial class NormalDistribution { - public override IContinuousDistribution GetContinuousDistribution(Random random) + public override IDistribution GetDistribution(Random random) { - return new Normal(DistributionParameters.Mean, DistributionParameters.Std, random); + return new ContinuousDistributionWrapper(new Normal(DistributionParameters.Mean, DistributionParameters.Std, random)); } public override double SampleDistribution(Random random) { - var distribution = GetContinuousDistribution(random); - return DrawSample(distribution, ScalingParameters, TruncationParameters); + return DrawSample(GetDistribution(random), ScalingParameters, TruncationParameters); } } partial class ExponentialDistribution { - public override IContinuousDistribution GetContinuousDistribution(Random random) + public override IDistribution GetDistribution(Random random) { - return new Exponential(DistributionParameters.Rate, random); + return new ContinuousDistributionWrapper(new Exponential(DistributionParameters.Rate, random)); } public override double SampleDistribution(Random random) { - var distribution = GetContinuousDistribution(random); - return DrawSample(distribution, ScalingParameters, TruncationParameters); + return DrawSample(GetDistribution(random), ScalingParameters, TruncationParameters); } } partial class LogNormalDistribution { - public override IContinuousDistribution GetContinuousDistribution(Random random) + public override IDistribution GetDistribution(Random random) { - return new LogNormal(DistributionParameters.Mean, DistributionParameters.Std, random); + return new ContinuousDistributionWrapper(new LogNormal(DistributionParameters.Mean, DistributionParameters.Std, random)); } public override double SampleDistribution(Random random) { - var distribution = GetContinuousDistribution(random); - return DrawSample(distribution, ScalingParameters, TruncationParameters); + return DrawSample(GetDistribution(random), ScalingParameters, TruncationParameters); } } partial class GammaDistribution { - public override IContinuousDistribution GetContinuousDistribution(Random random) + public override IDistribution GetDistribution(Random random) { - return new Gamma(DistributionParameters.Shape, DistributionParameters.Rate, random); + return new ContinuousDistributionWrapper(new Gamma(DistributionParameters.Shape, DistributionParameters.Rate, random)); } public override double SampleDistribution(Random random) { - var distribution = GetContinuousDistribution(random); - return DrawSample(distribution, ScalingParameters, TruncationParameters); + return DrawSample(GetDistribution(random), ScalingParameters, TruncationParameters); } } partial class BetaDistribution { - public override IContinuousDistribution GetContinuousDistribution(Random random) + public override IDistribution GetDistribution(Random random) { - return new Beta(DistributionParameters.Alpha, DistributionParameters.Beta, random); + return new ContinuousDistributionWrapper(new Beta(DistributionParameters.Alpha, DistributionParameters.Beta, random)); } public override double SampleDistribution(Random random) { - var distribution = GetContinuousDistribution(random); - return DrawSample(distribution, ScalingParameters, TruncationParameters); + return DrawSample(GetDistribution(random), ScalingParameters, TruncationParameters); } } partial class UniformDistribution { - public override IContinuousDistribution GetContinuousDistribution(Random random) + public override IDistribution GetDistribution(Random random) { - return new ContinuousUniform(DistributionParameters.Min, DistributionParameters.Max, random); + return new ContinuousDistributionWrapper(new ContinuousUniform(DistributionParameters.Min, DistributionParameters.Max, random)); } public override double SampleDistribution(Random random) { - var distribution = GetContinuousDistribution(random); - return DrawSample(distribution, ScalingParameters, TruncationParameters); + return DrawSample(GetDistribution(random), ScalingParameters, TruncationParameters); } } partial class BinomialDistribution { - public override IDiscreteDistribution GetDiscreteDistribution(Random random) + public override IDistribution GetDistribution(Random random) { - return new Binomial(DistributionParameters.P, DistributionParameters.N, random); + return new DiscreteDistributionWrapper(new Binomial(DistributionParameters.P, DistributionParameters.N, random)); } public override double SampleDistribution(Random random) { - var distribution = GetDiscreteDistribution(random); - return DrawSample(distribution, ScalingParameters, TruncationParameters); + return DrawSample(GetDistribution(random), ScalingParameters, TruncationParameters); } } partial class PoissonDistribution { - public override IDiscreteDistribution GetDiscreteDistribution(Random random) + public override IDistribution GetDistribution(Random random) { - return new Poisson(DistributionParameters.Rate, random); + return new DiscreteDistributionWrapper(new Poisson(DistributionParameters.Rate, random)); } public override double SampleDistribution(Random random) { - var distribution = GetDiscreteDistribution(random); - return DrawSample(distribution, ScalingParameters, TruncationParameters); + return DrawSample(GetDistribution(random), ScalingParameters, TruncationParameters); } } @@ -384,4 +349,61 @@ public IObservable Process(IObservable source) return source.Select(value => value.SampleDistribution(RandomSource)); } } + + + + public interface IDistribution + { + double Sample(); + + double[] Samples(double[] arr); + } + + public class ContinuousDistributionWrapper : IDistribution + { + private readonly IContinuousDistribution _distribution; + + public ContinuousDistributionWrapper(IContinuousDistribution distribution) + { + _distribution = distribution; + } + + public double Sample() + { + return _distribution.Sample(); + } + + public double[] Samples(double[] arr) + { + _distribution.Samples(arr); + return arr; + } + } + + public class DiscreteDistributionWrapper : IDistribution + { + private readonly IDiscreteDistribution _distribution; + + public DiscreteDistributionWrapper(IDiscreteDistribution distribution) + { + _distribution = distribution; + } + + public double Sample() + { + return (double)_distribution.Sample(); + } + + public double[] Samples(double[] arr) + { + int[] intSamples = new int[arr.Length]; + _distribution.Samples(intSamples); + for (int i = 0; i < arr.Length; i++) + { + arr[i] = (double)intSamples[i]; + } + return arr; + } + } + } diff --git a/uv.lock b/uv.lock index 4a77b1f5..2e417fb0 100644 --- a/uv.lock +++ b/uv.lock @@ -41,7 +41,7 @@ wheels = [ [[package]] name = "aind-behavior-services" -version = "0.12.2" +version = "0.12.3" source = { registry = "https://pypi.org/simple" } dependencies = [ { name = "aind-behavior-curriculum" }, @@ -50,9 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url = "https://files.pythonhosted.org/packages/67/c9/5b1b1da5a8dccabf4b6b9b42235eceaa4ee1f2c816a402e322f192f77a8a/aind_behavior_services-0.12.3-py3-none-any.whl", hash = "sha256:0a00588c1e29bac1295534e0c17169de862f914cd83b29248ff508fb782bdb3e", size = 38254, upload-time = "2025-10-15T22:15:59.672Z" }, ] [[package]] @@ -120,7 +120,7 @@ docs = [ [[package]] name = "aind-clabe" -version = "0.7.0" +version = "0.7.2" source = { registry = "https://pypi.org/simple" } dependencies = [ { name = "aind-behavior-services" }, @@ -130,9 +130,9 @@ dependencies = [ { name = "rich" }, { name = "semver" }, ] -sdist = { url = "https://files.pythonhosted.org/packages/67/9c/3c3bed11c9d11c23d6859f804e4bfe8530c382f46aea949ea5b320f4b8e7/aind_clabe-0.7.0.tar.gz", hash = "sha256:29390f13c6e1115ddfa9a7a26d11df7a77fde150f1ad26ea34244cceb1765e54", size = 57124, upload-time = "2025-10-09T23:11:33.423Z" } +sdist = { url = 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