@@ -40,90 +40,11 @@ def EcoKG(
4040 load_node_types , load_edge_types , load_edge_weights , auto_enable_tradeoffs , sort_tmp_dir ,
4141 verbose , ring_bell , cache , cache_path , cache_sys_var , kwargs
4242 )()
43- def KGIDG (
44- directed = False , preprocess = "auto" , bioregistry = False , load_nodes = True , load_node_types = True ,
45- load_edge_types = True , load_edge_weights = True , auto_enable_tradeoffs = True ,
46- sort_tmp_dir = None , verbose = 2 , ring_bell = False , cache = True , cache_path = None ,
47- cache_sys_var = "GRAPH_CACHE_DIR" , version = "current" , ** kwargs
48- ) -> Graph :
49- """Return KG-IDG graph
50-
51- Parameters
52- ----------
53- directed = False
54- preprocess = "auto"
55- Preprocess for optimal load time & memory peak.
56- Will preprocess in Linux/macOS but not Windows.
57- bioregistry=False
58- load_nodes = True
59- Load node names or use numeric range
60- load_node_types = True
61- load_edge_types = True
62- auto_enable_tradeoffs = True
63- Enable when graph has < 50M edges
64- cache_path = None
65- Path to store graphs
66- Defaults either to `GRAPH_CACHE_DIR` sys var or `graphs`
67- cache_sys_var = "GRAPH_CACHE_DIR"
68- version = "current"
69- Version to retrieve
70- The available versions are:
71- - 20211029
72- - 20211101
73- - 20211112
74- - 20211123
75- - 20211201
76- - 20211202
77- - 20211207
78- - 20211210
79- - 20211213
80- - 20211215
81- - 20211221
82- - 20211223
83- - 20220101
84- - 20220106
85- - 20220107
86- - 20220119
87- - 20220201
88- - 20220203
89- - 20220204
90- - 20220216
91- - 20220223
92- - 20220303
93- - 20220325
94- - 20220329
95- - 20220401
96- - 20220501
97- - 20220512
98- - 20220525
99- - 20220601
100- - 20220606
101- - 20220701
102- - 20220722
103- - 20221209
104- - 20230101
105- - 20230530
106- - 20230601
107- - 20230701
108- - 20230801
109- - 20230901
110- - 20231001
111- - 20231101
112- - 20231201
113- - current
114-
115-
116- """
117- return RetrievedGraph (
118- "KGIDG" , version , "kghub" , directed , preprocess , bioregistry , load_nodes ,
119- load_node_types , load_edge_types , load_edge_weights , auto_enable_tradeoffs , sort_tmp_dir ,
120- verbose , ring_bell , cache , cache_path , cache_sys_var , kwargs
121- )()
12243def KGCOVID19 (
12344 directed = False , preprocess = "auto" , bioregistry = False , load_nodes = True , load_node_types = True ,
12445 load_edge_types = True , load_edge_weights = True , auto_enable_tradeoffs = True ,
12546 sort_tmp_dir = None , verbose = 2 , ring_bell = False , cache = True , cache_path = None ,
126- cache_sys_var = "GRAPH_CACHE_DIR" , version = "current " , ** kwargs
47+ cache_sys_var = "GRAPH_CACHE_DIR" , version = "contact the KG-Hub team by email " , ** kwargs
12748) -> Graph :
12849 """Return kg-covid-19 graph
12950
@@ -144,47 +65,10 @@ def KGCOVID19(
14465 Path to store graphs
14566 Defaults either to `GRAPH_CACHE_DIR` sys var or `graphs`
14667 cache_sys_var = "GRAPH_CACHE_DIR"
147- version = "current "
68+ version = "contact the KG-Hub team by email "
14869 Version to retrieve
14970 The available versions are:
150- - 20200925
151- - 20200927
152- - 20200929
153- - 20201001
154- - 20201012
155- - 20201101
156- - 20201202
157- - 20210101
158- - 20210128
159- - 20210201
160- - 20210218
161- - 20210301
162- - 20210412
163- - 20210725
164- - 20210726
165- - 20210727
166- - 20210823
167- - 20210902
168- - 20211002
169- - 20211102
170- - 20211202
171- - 20220102
172- - 20220202
173- - 20220217
174- - 20220223
175- - 20220225
176- - 20220228
177- - 20220328
178- - 20220330
179- - 20220402
180- - 20220502
181- - 20220610
182- - 20220702
183- - 20220802
184- - 20220902
185- - 20221102
186- - 20230102
187- - current
71+ - contact the KG-Hub team by email
18872
18973 References
19074 ----------
@@ -208,13 +92,13 @@ def KGCOVID19(
20892 load_node_types , load_edge_types , load_edge_weights , auto_enable_tradeoffs , sort_tmp_dir ,
20993 verbose , ring_bell , cache , cache_path , cache_sys_var , kwargs
21094 )()
211- def SLDB (
95+ def KGIDG (
21296 directed = False , preprocess = "auto" , bioregistry = False , load_nodes = True , load_node_types = True ,
21397 load_edge_types = True , load_edge_weights = True , auto_enable_tradeoffs = True ,
21498 sort_tmp_dir = None , verbose = 2 , ring_bell = False , cache = True , cache_path = None ,
215- cache_sys_var = "GRAPH_CACHE_DIR" , version = "20220522 " , ** kwargs
99+ cache_sys_var = "GRAPH_CACHE_DIR" , version = "contact the KG-Hub team by email " , ** kwargs
216100) -> Graph :
217- """Return sldb graph
101+ """Return KG-IDG graph
218102
219103 Parameters
220104 ----------
@@ -233,15 +117,15 @@ def SLDB(
233117 Path to store graphs
234118 Defaults either to `GRAPH_CACHE_DIR` sys var or `graphs`
235119 cache_sys_var = "GRAPH_CACHE_DIR"
236- version = "20220522 "
120+ version = "contact the KG-Hub team by email "
237121 Version to retrieve
238122 The available versions are:
239- - 20220522
123+ - contact the KG-Hub team by email
240124
241125
242126 """
243127 return RetrievedGraph (
244- "SLDB " , version , "kghub" , directed , preprocess , bioregistry , load_nodes ,
128+ "KGIDG " , version , "kghub" , directed , preprocess , bioregistry , load_nodes ,
245129 load_node_types , load_edge_types , load_edge_weights , auto_enable_tradeoffs , sort_tmp_dir ,
246130 verbose , ring_bell , cache , cache_path , cache_sys_var , kwargs
247131 )()
@@ -402,6 +286,38 @@ def KGPhenio(
402286 - 20240408
403287 - 20240411
404288 - 20240514
289+ - 20240606
290+ - 20240607
291+ - 20240608
292+ - 20240708
293+ - 20240802
294+ - 20240808
295+ - 20240809
296+ - 20240904
297+ - 20241008
298+ - 20241104
299+ - 20241105
300+ - 20241108
301+ - 20241127
302+ - 20241203
303+ - 20241208
304+ - 20241210
305+ - 20250108
306+ - 20250130
307+ - 20250208
308+ - 20250210
309+ - 20250216
310+ - 20250307
311+ - 20250308
312+ - 20250321
313+ - 20250408
314+ - 20250414
315+ - 20250522
316+ - 20250604
317+ - 20250608
318+ - 20250708
319+ - 20250808
320+ - 20250912
405321 - current
406322
407323
@@ -411,3 +327,40 @@ def KGPhenio(
411327 load_node_types , load_edge_types , load_edge_weights , auto_enable_tradeoffs , sort_tmp_dir ,
412328 verbose , ring_bell , cache , cache_path , cache_sys_var , kwargs
413329 )()
330+ def SLDB (
331+ directed = False , preprocess = "auto" , bioregistry = False , load_nodes = True , load_node_types = True ,
332+ load_edge_types = True , load_edge_weights = True , auto_enable_tradeoffs = True ,
333+ sort_tmp_dir = None , verbose = 2 , ring_bell = False , cache = True , cache_path = None ,
334+ cache_sys_var = "GRAPH_CACHE_DIR" , version = "20220522" , ** kwargs
335+ ) -> Graph :
336+ """Return sldb graph
337+
338+ Parameters
339+ ----------
340+ directed = False
341+ preprocess = "auto"
342+ Preprocess for optimal load time & memory peak.
343+ Will preprocess in Linux/macOS but not Windows.
344+ bioregistry=False
345+ load_nodes = True
346+ Load node names or use numeric range
347+ load_node_types = True
348+ load_edge_types = True
349+ auto_enable_tradeoffs = True
350+ Enable when graph has < 50M edges
351+ cache_path = None
352+ Path to store graphs
353+ Defaults either to `GRAPH_CACHE_DIR` sys var or `graphs`
354+ cache_sys_var = "GRAPH_CACHE_DIR"
355+ version = "20220522"
356+ Version to retrieve
357+ The available versions are:
358+ - 20220522
359+
360+
361+ """
362+ return RetrievedGraph (
363+ "SLDB" , version , "kghub" , directed , preprocess , bioregistry , load_nodes ,
364+ load_node_types , load_edge_types , load_edge_weights , auto_enable_tradeoffs , sort_tmp_dir ,
365+ verbose , ring_bell , cache , cache_path , cache_sys_var , kwargs
366+ )()
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