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‎README.md‎

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@@ -23,7 +23,7 @@ mamba installed.)
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## How to use
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Use
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[`CaptureShell`](https://fastai.github.io/execnb/shell.html#captureshell)
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[`CaptureShell`](https://AnswerDotAI.github.io/execnb/shell.html#captureshell)
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to run Jupyter code and capture notebook outputs, without running a
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Jupyter server (or even having it installed):
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@@ -44,7 +44,7 @@ s.run('1+1')
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'execution_count': 1}]
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To execute a notebook and save it with outputs filled in, use
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[`CaptureShell.execute`](https://fastai.github.io/execnb/shell.html#captureshell.execute):
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[`CaptureShell.execute`](https://AnswerDotAI.github.io/execnb/shell.html#captureshell.execute):
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``` python
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try:
@@ -56,7 +56,7 @@ finally: Path('tmp.ipynb').unlink()
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[{'name': 'stdout', 'output_type': 'stream', 'text': ['1\n']}, {'data': {'text/plain': ['2']}, 'execution_count': 3, 'metadata': {}, 'output_type': 'execute_result'}]
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You can also execute notebooks from the command line with
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[`exec_nb`](https://fastai.github.io/execnb/shell.html#exec_nb):
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[`exec_nb`](https://AnswerDotAI.github.io/execnb/shell.html#exec_nb):
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``` python
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!exec_nb --help

‎nbs/02_shell.ipynb‎

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"text/plain": [
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"[{'name': 'stdout',\n",
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" 'output_type': 'stream',\n",
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" 'text': ['CPU times: user 1 us, sys: 0 ns, total: 1 us\\n',\n",
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" 'Wall time: 4.05 us\\n'],\n",
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" 'text': ['CPU times: user 2 us, sys: 1 us, total: 3 us\\n',\n",
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" 'Wall time: 4.29 us\\n'],\n",
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" 'execution_count': None},\n",
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" {'data': {'text/plain': ['2']},\n",
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" 'metadata': {},\n",
@@ -1025,7 +1025,7 @@
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"File <ipython-input-1-a5c3817716b6>:1\n",
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"----> 1 import time; time.sleep(1.1)\n",
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"\n",
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"Cell In[6], line 7, in run_cell.<locals>.handler(*args)\n",
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"Cell In[143], line 7, in run_cell.<locals>.handler(*args)\n",
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"----> 7 def handler(*args): raise TimeoutError()\n",
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"\n",
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"TimeoutError: \n",
@@ -1064,7 +1064,7 @@
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"File <span class=\"ansi-green-fg\">&lt;ipython-input-1-a5c3817716b6&gt;:1</span>\n",
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"<span class=\"ansi-green-fg\">----&gt; 1</span> <span class=\"ansi-bold\" style=\"color: rgb(0,135,0)\">import</span> <span class=\"ansi-bold\" style=\"color: rgb(0,0,255)\">time</span>; time<span style=\"color: rgb(98,98,98)\">.</span>sleep(<span style=\"color: rgb(98,98,98)\">1.1</span>)\n",
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"\n",
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"Cell <span class=\"ansi-green-fg\">In[6], line 7</span>, in <span class=\"ansi-cyan-fg\">run_cell.&lt;locals&gt;.handler</span><span class=\"ansi-blue-fg\">(*args)</span>\n",
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"Cell <span class=\"ansi-green-fg\">In[143], line 7</span>, in <span class=\"ansi-cyan-fg\">run_cell.&lt;locals&gt;.handler</span><span class=\"ansi-blue-fg\">(*args)</span>\n",
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"<span class=\"ansi-green-fg\">----&gt; 7</span> <span class=\"ansi-bold\" style=\"color: rgb(0,135,0)\">def</span> <span style=\"color: rgb(0,0,255)\">handler</span>(<span style=\"color: rgb(98,98,98)\">*</span>args): <span class=\"ansi-bold\" style=\"color: rgb(0,135,0)\">raise</span> <span class=\"ansi-bold\" style=\"color: rgb(215,95,95)\">TimeoutError</span>()\n",
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"\n",
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"<span class=\"ansi-red-fg\">TimeoutError</span>: \n",
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"[{'data': {'text/plain': ['<IPython.core.display.Markdown object>'],\n",
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" 'text/markdown': [\"This is *bold*. Here's a [link](https://www.fast.ai).\"]},\n",
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" 'metadata': {},\n",
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" 'output_type': 'execute_result'}]"
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" 'output_type': 'execute_result',\n",
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" 'execution_count': None}]"
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]
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},
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"execution_count": null,
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" 'File \\x1b[0;32m<ipython-input-1-1c97c1d317ab>:1\\x1b[0m\\n',\n",
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" '\\x1b[0;32m----> 1\\x1b[0m \\x1b[38;5;28;01mraise\\x1b[39;00m \\x1b[38;5;167;01mException\\x1b[39;00m(\\x1b[38;5;124m\"\\x1b[39m\\x1b[38;5;124mOopsie!\\x1b[39m\\x1b[38;5;124m\"\\x1b[39m)\\n',\n",
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" '\\n',\n",
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" '\\x1b[0;31mException\\x1b[0m: Oopsie!\\n']},\n",
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" '\\x1b[0;31mException\\x1b[0m: Oopsie!\\n'],\n",
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" 'execution_count': None},\n",
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" {'ename': 'Exception',\n",
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" 'evalue': 'Oopsie!',\n",
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" 'output_type': 'error',\n",
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" 'traceback': 'Traceback (most recent call last):\\n File \"/Users/jhoward/miniconda3/lib/python3.11/site-packages/IPython/core/interactiveshell.py\", line 3577, in run_code\\n exec(code_obj, self.user_global_ns, self.user_ns)\\n File \"<ipython-input-1-1c97c1d317ab>\", line 1, in <module>\\n raise Exception(\"Oopsie!\")\\nException: Oopsie!\\n'}]"
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" 'traceback': 'Traceback (most recent call last):\\n File \"/Users/jhoward/miniconda3/lib/python3.11/site-packages/IPython/core/interactiveshell.py\", line 3577, in run_code\\n exec(code_obj, self.user_global_ns, self.user_ns)\\n File \"<ipython-input-1-1c97c1d317ab>\", line 1, in <module>\\n raise Exception(\"Oopsie!\")\\nException: Oopsie!\\n',\n",
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" 'execution_count': None}]"
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]
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},
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"execution_count": null,
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{
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"data": {
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"text/plain": [
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"[{'name': 'stdout', 'output_type': 'stream', 'text': ['1\\n']},\n",
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"[{'name': 'stdout',\n",
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" 'output_type': 'stream',\n",
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" 'text': ['1\\n'],\n",
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" 'execution_count': None},\n",
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" {'data': {'text/plain': ['2']},\n",
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" 'metadata': {},\n",
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" 'output_type': 'execute_result'}]"
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" 'output_type': 'execute_result',\n",
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" 'execution_count': None}]"
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]
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},
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"execution_count": null,
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"[{'name': 'stdout', 'output_type': 'stream', 'text': ['1\\n']}, {'data': {'text/plain': ['2']}, 'metadata': {}, 'output_type': 'execute_result'}]\n"
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"[{'execution_count': None, 'name': 'stdout', 'output_type': 'stream', 'text': ['1\\n']}, {'data': {'text/plain': ['2']}, 'execution_count': None, 'metadata': {}, 'output_type': 'execute_result'}]\n"
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]
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}
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],
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"\n",
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"While Executing Cell #2:\n",
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"Traceback (most recent call last):\n",
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" File \"/var/folders/ss/34z569j921v58v8n1n_8z7h40000gn/T/ipykernel_18616/1421292703.py\", line 3, in <module>\n",
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" File \"/var/folders/ss/34z569j921v58v8n1n_8z7h40000gn/T/ipykernel_6273/1421292703.py\", line 3, in <module>\n",
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" s.execute('../tests/error.ipynb', exc_stop=True)\n",
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" File \"/var/folders/ss/34z569j921v58v8n1n_8z7h40000gn/T/ipykernel_18616/3609882568.py\", line 18, in execute\n",
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" File \"/var/folders/ss/34z569j921v58v8n1n_8z7h40000gn/T/ipykernel_6273/3609882568.py\", line 18, in execute\n",
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" self.run_all(nb, exc_stop=exc_stop, preproc=preproc, postproc=postproc,\n",
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" File \"/var/folders/ss/34z569j921v58v8n1n_8z7h40000gn/T/ipykernel_18616/3068237356.py\", line 19, in run_all\n",
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" File \"/var/folders/ss/34z569j921v58v8n1n_8z7h40000gn/T/ipykernel_6273/3068237356.py\", line 19, in run_all\n",
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" if self.exc and exc_stop: raise self.exc from None\n",
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" ^^^^^^^^^^^^^^^^^^^^^^^^\n",
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" File \"/Users/jhoward/miniconda3/lib/python3.11/site-packages/IPython/core/interactiveshell.py\", line 3577, in run_code\n",
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"#|hide\n",
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"# `display_data` flushes stdout and stderr - in that order\n",
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"res = CaptureShell().run(\"import sys; sys.stderr.write('Error!'); print(1); display(1)\")\n",
1846-
"test_eq(res, [{'name': 'stdout', 'output_type': 'stream', 'text': ['1\\n']},\n",
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" {'name': 'stderr', 'output_type': 'stream', 'text': ['Error!']},\n",
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" {'data': {'text/plain': ['1']}, 'metadata': {}, 'output_type': 'display_data'}])"
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"test_eq(res, [{'name': 'stdout', 'output_type': 'stream', 'text': ['1\\n'], 'execution_count': None},\n",
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" {'name': 'stderr', 'output_type': 'stream', 'text': ['Error!'], 'execution_count': None},\n",
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" {'data': {'text/plain': ['1']}, 'metadata': {}, 'output_type': 'display_data', 'execution_count': None}])"
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]
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},
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{
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"#|hide\n",
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"# Consecutive writes to stdout are grouped\n",
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"res = CaptureShell().run('print(1); print(2); print(3)')\n",
1860-
"test_eq(res, [{'name': 'stdout', 'output_type': 'stream', 'text': ['1\\n', '2\\n', '3\\n']}])"
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"test_eq(res, [{'name': 'stdout', 'output_type': 'stream', 'text': ['1\\n', '2\\n', '3\\n'], 'execution_count': None}])"
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]
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},
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{
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"#|hide\n",
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"# Consecutive writes to stdout are grouped despite an intermediate write to stderr, which is captured after\n",
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"res = CaptureShell().run(\"import sys; print(1); print(2); sys.stderr.write('Error!'); print(3)\")\n",
1872-
"test_eq(res, [{'name': 'stdout', 'output_type': 'stream', 'text': ['1\\n', '2\\n', '3\\n']},\n",
1873-
" {'name': 'stderr', 'output_type': 'stream', 'text': ['Error!']}])"
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"test_eq(res, [{'name': 'stdout', 'output_type': 'stream', 'text': ['1\\n', '2\\n', '3\\n'], 'execution_count': None},\n",
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" {'name': 'stderr', 'output_type': 'stream', 'text': ['Error!'], 'execution_count': None}])"
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]
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},
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{
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"#|hide\n",
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"# `execute_result` is always last\n",
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"res = CaptureShell().run(\"import sys; sys.stderr.write('Error!'); print(1); display(1); 1\")\n",
1885-
"test_eq(res, [{'name': 'stdout', 'output_type': 'stream', 'text': ['1\\n']},\n",
1886-
" {'name': 'stderr', 'output_type': 'stream', 'text': ['Error!']},\n",
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" {'data': {'text/plain': ['1']}, 'metadata': {}, 'output_type': 'display_data'},\n",
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" {'data': {'text/plain': ['1']}, 'metadata': {}, 'output_type': 'execute_result'}])"
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"test_eq(res, [{'name': 'stdout', 'output_type': 'stream', 'text': ['1\\n'], 'execution_count': None},\n",
1893+
" {'name': 'stderr', 'output_type': 'stream', 'text': ['Error!'], 'execution_count': None},\n",
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" {'data': {'text/plain': ['1']}, 'metadata': {}, 'output_type': 'display_data', 'execution_count': None},\n",
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" {'data': {'text/plain': ['1']}, 'metadata': {}, 'output_type': 'execute_result', 'execution_count': None}])"
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]
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},
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{
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" 'execution_count': None,\n",
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" 'id': 'ea528db5',\n",
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" 'metadata': {},\n",
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" 'outputs': [{'name': 'stdout', 'output_type': 'stream', 'text': ['2\\n']}],\n",
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" 'outputs': [{'name': 'stdout',\n",
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" 'output_type': 'stream',\n",
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" 'text': ['2\\n'],\n",
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" 'execution_count': None}],\n",
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" 'source': 'print(a)',\n",
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" 'idx_': 1}]"
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]

‎nbs/nbdev.yml‎

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website:
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title: "execnb"
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site-url: "https://fastai.github.io/execnb/"
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site-url: "https://AnswerDotAI.github.io/execnb/"
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description: "A description of your project"
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repo-branch: master
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repo-url: "https://github.com/fastai/execnb/"
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repo-url: "https://github.com/AnswerDotAI/execnb/"

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