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melundmelund
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Update zenodo information and links (#785)
* Update zenodo information and links * Backport fix to BM table links * Update changelog * Proff read text on landing page
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‎Body/AAUHuman/BodyModels/GenericBodyModel/undef_BM_params.any‎

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#ifdef BM_GLOBAL_REFERENCE_FRAME
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#undef BM_GLOBAL_REFERENCE_FRAME
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#endif
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#ifdef _BM_PELVIS_DISPLAY_
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#undef _BM_PELVIS_DISPLAY_
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#endif

‎Body/AAUHuman/BuildTools/bmtable.csv.jinja‎

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{% for name, data in data.items() -%}
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'{{name}}', '{{data.descr|replace("'", '"')}}'
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'{any}`{{name}}`', '{{data.descr|replace("'", '"')}}'
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{% endfor -%}

‎CHANGELOG.md‎

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joint where marker tracking solver would occasional find a local minima with
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unphysiological posture.
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* Tables with body model configuration parameter in the AMMR documentation now contains
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links showing their options. See for example the page on {doc}`Leg model parameter </bm_config/leg>`.
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**Fixed:**
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Thank you for sharing these entries with me. Here are some revised versions:
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* Fixed an issue with wrist joint segment's load time position (start guess). This greatly improves kinematic robustness of all models with arms as it creates a 'universal-joint' mechanism for wrist movement.
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‎Docs/about.md‎

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The AnyBody Managed Model Repository now has a DOI {{ DOI }}.
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This is handled by [Zenodo.org](https://zenodo.org/), which is an European Open Science platform hosted at CERN.
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You can download all archived versions of the AMMR from [Zenodo.org](https://doi.org/10.5281/zenodo.1250764/).
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You can download all archived versions of the AMMR from [Zenodo.org](https://doi.org/10.5281/zenodo.1250764).
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The DOI is also usefull when citing the AMMR. For example, when citing the AMMR 2.4.3:
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‎Docs/bm_config/ArmTable.csv‎

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'BM_ARM_THORAX_SCAPULA_CONTACT', 'Parameter defining the contact type between Thorax and Scapula'
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'BM_ARM_STRENGTH_INDEX', 'Index parameter to specify muscle strength for upper extremities.'
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'BM_ARM_LEFT', 'Switch for the left arm model being present or not.'
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'BM_ARM_DETAIL_HAND_LEFT', 'Keyword for the type of left hand.'
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'BM_ARM_SHOULDER_RHYTHM_LEFT', 'Switch for the shoulder rhythm constraints for the left arm being present or not.'
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'BM_ARM_RIGHT', 'Switch for the right arm model being present or not.'
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'BM_ARM_DETAIL_HAND_RIGHT', 'Keyword for the type of right hand.'
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'BM_ARM_SHOULDER_RHYTHM_RIGHT', 'Switch for the shoulder rhythm constraints for the right arm being present or not.'
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'BM_ARM_SHOULDER_RHYTHM', 'Switch for the shoulder rhythm constraints. ON indicate that the rhythm is a hard contraint while _RHYTHM_SOFT_ will make the rhythm as soft kinematic contraint.'
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'BM_ARM_CLAVICULA_ROTATION_RHYTHM', 'Switch for the clavicula rotation rhythm. If enabled axial rotation of the clavicula will be distributed evenly between the sterno-clavicula and acromio-clavicula joint. Effectively removing clavicula axial rotation as an independent degree of freedom.resterno-clavicula axial rotation.'
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'BM_ARM_DETAILED_HAND', 'Switch for enabling the detailed hand.'
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'BM_ARM_DELTOID_WRAPPING', 'Switch for deltoid wrapping. Setting this to OFF or _DELTOID_WRAPPING_RAKE_ will revert to the older rake based implementation of the deltoid.'
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'BM_ARM_MUSCLES_BOTH', 'Keyword for the muscle model type for both left and right arms.'
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'BM_ARM_MUSCLES_LEFT', 'Keyword for the muscle model type for the left arm.'
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'BM_ARM_MUSCLES_RIGHT', 'Keyword for the muscle model for both the right arm.'
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'{any}`BM_ARM_THORAX_SCAPULA_CONTACT`', 'Parameter defining the contact type between Thorax and Scapula'
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'{any}`BM_ARM_STRENGTH_INDEX`', 'Index parameter to specify muscle strength for upper extremities.'
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'{any}`BM_ARM_LEFT`', 'Switch for the left arm model being present or not.'
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'{any}`BM_ARM_DETAIL_HAND_LEFT`', 'Keyword for the type of left hand.'
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'{any}`BM_ARM_SHOULDER_RHYTHM_LEFT`', 'Switch for the shoulder rhythm constraints for the left arm being present or not.'
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'{any}`BM_ARM_RIGHT`', 'Switch for the right arm model being present or not.'
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'{any}`BM_ARM_DETAIL_HAND_RIGHT`', 'Keyword for the type of right hand.'
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'{any}`BM_ARM_SHOULDER_RHYTHM_RIGHT`', 'Switch for the shoulder rhythm constraints for the right arm being present or not.'
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'{any}`BM_ARM_SHOULDER_RHYTHM`', 'Switch for the shoulder rhythm constraints. ON indicate that the rhythm is a hard contraint while _RHYTHM_SOFT_ will make the rhythm as soft kinematic contraint.'
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'{any}`BM_ARM_CLAVICULA_ROTATION_RHYTHM`', 'Switch for the clavicula rotation rhythm. If enabled axial rotation of the clavicula will be distributed evenly between the sterno-clavicula and acromio-clavicula joint. Effectively removing clavicula axial rotation as an independent degree of freedom.resterno-clavicula axial rotation.'
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'{any}`BM_ARM_DETAILED_HAND`', 'Switch for enabling the detailed hand.'
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'{any}`BM_ARM_DELTOID_WRAPPING`', 'Switch for deltoid wrapping. Setting this to OFF or _DELTOID_WRAPPING_RAKE_ will revert to the older rake based implementation of the deltoid.'
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'{any}`BM_ARM_MUSCLES_BOTH`', 'Keyword for the muscle model type for both left and right arms.'
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'{any}`BM_ARM_MUSCLES_LEFT`', 'Keyword for the muscle model type for the left arm.'
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'{any}`BM_ARM_MUSCLES_RIGHT`', 'Keyword for the muscle model for both the right arm.'

‎Docs/bm_config/JointTypeTable.csv‎

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'BM_JOINT_TYPE_HIP_RIGHT', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'BM_JOINT_TYPE_HIP_LEFT', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'BM_JOINT_TYPE_KNEE_RIGHT', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'BM_JOINT_TYPE_KNEE_LEFT', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'BM_JOINT_TYPE_PATELLOFEMORAL_RIGHT', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'BM_JOINT_TYPE_PATELLOFEMORAL_LEFT', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'BM_JOINT_TYPE_ANKLE_RIGHT', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'BM_JOINT_TYPE_ANKLE_LEFT', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'BM_JOINT_TYPE_SUBTALAR_RIGHT', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'BM_JOINT_TYPE_SUBTALAR_LEFT', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'BM_JOINT_TYPE_PATELLATENDON_RIGHT', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'BM_JOINT_TYPE_PATELLATENDON_LEFT', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'{any}`BM_JOINT_TYPE_HIP_RIGHT`', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'{any}`BM_JOINT_TYPE_HIP_LEFT`', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'{any}`BM_JOINT_TYPE_KNEE_RIGHT`', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'{any}`BM_JOINT_TYPE_KNEE_LEFT`', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'{any}`BM_JOINT_TYPE_PATELLOFEMORAL_RIGHT`', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'{any}`BM_JOINT_TYPE_PATELLOFEMORAL_LEFT`', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'{any}`BM_JOINT_TYPE_ANKLE_RIGHT`', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'{any}`BM_JOINT_TYPE_ANKLE_LEFT`', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'{any}`BM_JOINT_TYPE_SUBTALAR_RIGHT`', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'{any}`BM_JOINT_TYPE_SUBTALAR_LEFT`', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'{any}`BM_JOINT_TYPE_PATELLATENDON_RIGHT`', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'
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'{any}`BM_JOINT_TYPE_PATELLATENDON_LEFT`', 'Parameter for switching between different joint types. Can also be used to completely exclude the joint, which then must be re-implemented manually.'

‎Docs/bm_config/LegTable.csv‎

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'BM_LEG_MODEL', 'Parameter defining the Leg model used.'
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'BM_LEG_LEFT', 'Parameter for switching the left leg On/Off. To control which leg model is used, please use the {any}`BM_LEG_MODEL` parameter.'
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'BM_LEG_RIGHT', 'Parameter for switching the right leg On/Off. To control which leg model is used, please use the {any}`BM_LEG_MODEL` parameter.'
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'BM_LEG_STRENGTH_INDEX', 'Index parameter to specify muscle strength for lower extremities'
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'BM_LEG_MUSCLES_BOTH', 'Parameter to define muscle behavior of both right and left leg'
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'BM_LEG_MUSCLES_LEFT', 'Parameter to define muscle behavior of the left leg'
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'BM_LEG_MUSCLES_RIGHT', 'Parameter to define muscle behavior of the right leg'
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'BM_LEG_DATASET', 'Path to specify the underlying dataset. This currently only affects the TLEM based models. Valid options depends on which model (TLEM1/2) is used, and what dataset are available. If not specified, this will be configure automatically.'
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'BM_LEG_TRUNK_INTERFACE', 'Keyword for the interface morhping between the trunk and the leg pelvis segments.'
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'{any}`BM_LEG_MODEL`', 'Parameter defining the Leg model used.'
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'{any}`BM_LEG_LEFT`', 'Parameter for switching the left leg On/Off. To control which leg model is used, please use the {any}`BM_LEG_MODEL` parameter.'
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'{any}`BM_LEG_RIGHT`', 'Parameter for switching the right leg On/Off. To control which leg model is used, please use the {any}`BM_LEG_MODEL` parameter.'
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'{any}`BM_LEG_STRENGTH_INDEX`', 'Index parameter to specify muscle strength for lower extremities'
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'{any}`BM_LEG_MUSCLES_BOTH`', 'Parameter to define muscle behavior of both right and left leg'
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'{any}`BM_LEG_MUSCLES_LEFT`', 'Parameter to define muscle behavior of the left leg'
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'{any}`BM_LEG_MUSCLES_RIGHT`', 'Parameter to define muscle behavior of the right leg'
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'{any}`BM_LEG_DATASET`', 'Path to specify the underlying dataset. This currently only affects the TLEM based models. Valid options depends on which model (TLEM1/2) is used, and what dataset are available. If not specified, this will be configure automatically.'
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'{any}`BM_LEG_TRUNK_INTERFACE`', 'Keyword for the interface morhping between the trunk and the leg pelvis segments.'

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