fixed errors

Author: ranimandepudi

.github/workflows/test-tinker.yml

@@ -151,14 +151,18 @@ jobs:
           # We force OBJS to be appended to the dependency list
           sed -i 's/libtinker.a: ${OBJS}/libtinker.a: ${OBJS} potent.o action.o energi.o boxes.o/g' Makefile
           
-          # CRITICAL FIX: The default libtinker.a rule uses a hardcoded object list that is missing files.
-          # Rather than trying to patch the complex rule, we rename it to disable it, and append a correct one.
-          
-          # 1. Rename the old target to disable it
+          # CRITICAL FIX: Explicitly compile the missing objects to ensure they exist.
+          # The makefile rules might be missing or not triggering correctly for these specific files.
+          echo "Compiling missing objects manually..."
+          gfortran -c -O2 -fdefault-integer-8 -fdefault-real-8 -mcmodel=large potent.f || echo "Failed to compile potent.f"
+          gfortran -c -O2 -fdefault-integer-8 -fdefault-real-8 -mcmodel=large action.f || echo "Failed to compile action.f"
+          gfortran -c -O2 -fdefault-integer-8 -fdefault-real-8 -mcmodel=large energi.f || echo "Failed to compile energi.f"
+          gfortran -c -O2 -fdefault-integer-8 -fdefault-real-8 -mcmodel=large boxes.f || echo "Failed to compile boxes.f"
+          
+          # Now rename the old broken target
           sed -i 's/^libtinker.a:/OLD_libtinker.a:/g' Makefile
           
-          # 2. Append the new, correct target rule
-          # We explicitly list the missing objects here as well to be safe
+          # Append the new target rule, explicitly listing the objects we just compiled
           echo "" >> Makefile
           echo "libtinker.a: \${OBJS} potent.o action.o energi.o boxes.o" >> Makefile
           echo -e "\tar \${LIBFLAGS} libtinker.a \${OBJS} potent.o action.o energi.o boxes.o" >> Makefile