GToTree v1.4.1

adding additional-target pfam search option to main program and creating iToL-compatible files for easy coloring additional targets on iToL website

GToTree v1.3.1

added GToTree-pfam-search function, see "Visualizing FliT gene across Bacteria" on the examples page
added citation report based on programs used in a run

GToTree v1.2.1

now generates a partitions file compatible with tree programs capable of using mixed models

GToTree v1.1.13

• fixing a minor bug where some species labels weren't showing up in the final tree

GToTree v1.1.12

added SCG-set for bacteria and archaea together

GToTree v1.1.11

minor bug fixes and prodigal-termination message improvement

GToTree v1.1.10

• added capability to start off with amino acid files of coding sequences as input
• improved handling of odd situations when specifying label swaps or using taxonkit
• improved output summary tables

GToTree v1.1.9

• enabled gzipped fasta files or genbank files to be provided as inputs
• added specific versions to conda-installed packages in the conda-setup.sh script

GToTree v1.1.8

• updated gtt-hmms to count properly when hmm profile doesn’t have accessions in it
• incorporated exit and termination report when all genes are length-filtered out of existence (shouldn’t happen except under strange circumstances like when testing or using VERY few target genes and/or genomes

GToTree v1.1.7

Added a log file.
Added support values when run with iqtree.
Modified conda launch lines in conda-setup.sh script