version #126

	name: build-and-test

	on:
	push:
	pull_request:

	jobs:
	build-and-test:
	if: ${{ !contains(github.event.head_commit.message, '[skip ci]') }}

	strategy:
	matrix:
	os: ["ubuntu-latest", "macos-latest"]
	runs-on: ${{ matrix.os }}

	steps:
	- uses: actions/checkout@v4

	- name: Set up miniconda
	uses: conda-incubator/setup-miniconda@v3
	with:
	python-version: "3.10"
	architecture: "x86_64"
	auto-activate-base: true
	channels: conda-forge,bioconda
	channel-priority: strict
	auto-update-conda: true

	- name: Build conda package
	run: \|
	conda install -n base conda-build -y
	conda build conda-recipe --output-folder build_artifacts

	- name: Create conda env
	run: \|
	conda create -n bit -y

	- name: Add local area as channel
	run: \|
	conda run -n bit conda config --add channels file://${PWD}/build_artifacts

	- name: Install built package
	run: \|
	conda run -n bit conda install bit -y
	conda run -n bit pip install -e . # the editable pip install is so test coverages make sense

	- name: Set env var so subprocesses get coverage
	run: echo "COVERAGE_PROCESS_START=.coveragerc" >> $GITHUB_ENV

	- name: Run pytest
	run: \|
	conda run -n bit pytest

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