Updated to cover current admin tools

Author: nohelix

README.md

@@ -57,7 +57,13 @@ The `supervisor-assign.R` file, combined with the summary .xlsx file, also acts
 Several small scripts are available for those comfortable with R. Note that these have *not* been made user friendly or robust. **Use at your own risk.**
 - `Load enviornment.R` - This should be used following a cleaning of the global environment. *It can be out of sync from main*
 - `Common lookups.R` - This contain short scripts that filter run_archive or rat_archive for information that I have looked up several times. These have not been made into functions.
+- `supervisor-summarize-custom.R` - If you want to export something other than the default, use this script. Note it is identical to the common tool except for the addition of file_name = "supervisor.xlsx" that allows you to NOT overwrite the default output.
+- `check and backup.R` - checks the trial counts between the run_archive and all the trial archives. Attempts to remedy any issues using code independent but similar to the `remove entry.R` and `import_deleted_entries.R`. **KNOWN FAILURE CASE**: if an entry is listed more than once, i.e. its been deleted more than once it will cause it to not know which one to use and so will not attempt to reload. Reduce to one entry.
 - `Modify an entry.R` - This contains a quick way to set a run invalid, change the weight or assignment. It should be kept in the **safe** state i.e. comment out from = to the new value.
-- `remove entry.R` and `Clean NA_archive entries.R` - These are used to clean poor entries. They are under active development to make them safe for others to use. Remove entry has been made into a function that backs-up deleted data and requires confrimation to use.
-- `import_old_excel.R` - This is a utility to read a directory tree and import information from the old experimental excel sheets that PiedPiper is designed to replace.
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+- `remove entry.R` - Use to clean poor entries. They are under active development to make them safe for others to use. Remove entry has been made into a function that backs-up deleted data and requires confirmation to use. Should typically be used in conjunction with import_deleted_entries, which will attempt to reload them based on the deleted_entries.csv.
+- `import_deleted_entries.R` - Attempts to find any previously deleted entries (that have been recorded in the deleted_entries.csv) that have not already been re-entered and then auto-loads them. **KNOWN FAILURE CASE**: if an entry is listed more than once, i.e. its been deleted more than once it will cause it to not know which one to use and so will not attempt to reload. Reduce to one entry.
+- `Exporter.R` - used to export the run_archive as a csv. This is a work in progress.
+- `Graphing (Weight).R` - Similar but supervisor version of the weight graph shown during data entry. Has some extra data and is in a different color scheme.
+- `Graphing.R`- Can be used to graph rxn or dprime similar to the one shown during undergrad data entry. Has additional settings like setting a specific cut off date. Shows fitted line with every point. For reaction graph points are colored by step size.
+- `fixer.R` - a useful starting point for making repeated changes to run_archive. Note this script is NOT complete and requires modification for each explicit use. This is paritially intentional because it should NOT be used lightly.
+- `import_old_excel.R` - This is a utility to read a directory tree and import information from the old experimental excel sheets that PiedPiper is designed to replace.