benchmark URI addition

Author: dtyagi

benchmarks/common/summarize_results.py

@@ -7,6 +7,7 @@ def create_summary(configurations: list[str],
                    solution_metrics: list[str],
                    solution_field_data: list[str],
                    benchmark: str,
+                   benchmark_uri: str,
                    summary_json: str) -> None:
 
     """
@@ -19,16 +20,16 @@ def create_summary(configurations: list[str],
         solution_metrics: List of paths to metrics JSON files
         solution_field_data: List of paths to solution field data files
         benchmark: Name of the benchmark
+        benchmark_uri: URI of the benchmark
         summary_json: Output path for the summary JSON file
     """
 
 
     all_summaries = []
     for idx, config in enumerate(configurations):
-        print(idx, config)
         summary = {}
         summary["benchmark"] = benchmark
-        print(solution_metrics[idx])
+        summary["benchmark_uri"] = benchmark_uri
         with open(parameter_files[idx], "r") as param_file:
             summary["parameters"] = json.load(param_file)
         summary["mesh"] = f"{config}/mesh"

benchmarks/linear-elastic-plate-with-hole/Snakefile

@@ -6,6 +6,7 @@ configuration_to_parameter_file = config["configuration_to_parameter_file"]
 configurations = config["configurations"]
 tools = config["tools"]
 benchmark = config["benchmark"]
+benchmark_uri = config["benchmark_uri"]
 
 
 rule all:
@@ -64,6 +65,7 @@ rule summary:
             --input_solution_metrics {input.metrics} \
             --input_solution_field_data {input.solution_field_data} \
             --input_benchmark {benchmark} \
+            --input_benchmark_uri {benchmark_uri} \
             --output_summary_json {output.summary_json}
         """
 

benchmarks/linear-elastic-plate-with-hole/generate_config.py

@@ -46,7 +46,8 @@ def get_configuration(file):
     "configuration_to_parameter_file": configuration_to_parameter_file,
     "configurations": list(configurations.values()),
     "tools": ["fenics", "kratos"],
-    "benchmark": benchmark
+    "benchmark": benchmark,
+    "benchmark_uri": "https://portal.mardi4nfdi.de/wiki/Model:6775296",
 }
 
 # Write workflow configuration file

benchmarks/linear-elastic-plate-with-hole/main.nf

@@ -35,6 +35,7 @@ process summary{
     val solution_field_data
     val benchmark
     val tool
+    val benchmark_uri
 
     output:
     path("summary.json")
@@ -48,6 +49,7 @@ process summary{
         --input_solution_metrics ${solution_metrics.join(' ')} \
         --input_solution_field_data ${solution_field_data.join(' ')} \
         --input_benchmark ${benchmark} \
+        --input_benchmark_uri ${benchmark_uri} \
         --output_summary_json "summary.json"
 
     """
@@ -137,6 +139,7 @@ workflow {
 
     //Summarizing results
     def ch_benchmark = Channel.value(params.benchmark)
+    def ch_benchmark_uri = Channel.value(params.benchmark_uri)
     def ch_summarize_python_script = Channel.value(file('../common/summarize_results.py'))
     summary(ch_summarize_python_script, \
             input_summary_configuration, \
@@ -145,6 +148,7 @@ workflow {
             input_summary_metrics, \
             input_summary_solution_field, \
             ch_benchmark, \
+            ch_benchmark_uri, \
             ch_tools)
 
 }