Add missing py file

Author: M-Jafarkhani

benchmarks/linear-elastic-plate-with-hole/upload_provenance.py

@@ -0,0 +1,98 @@
+import argparse
+import rohub
+import time
+
+
+def parse_args():
+    parser = argparse.ArgumentParser(
+        description="Process ro-crate-metadata.json artifacts and display simulation results."
+    )
+    parser.add_argument(
+        "--provenance_folderpath",
+        type=str,
+        required=True,
+        help="Path to the folder containing provenance data",
+    )
+    parser.add_argument(
+        "--username",
+        type=str,
+        required=True,
+        help="Username for RoHub",
+    )
+    parser.add_argument(
+        "--password",
+        type=str,
+        required=True,
+        help="Password for RoHub",
+    )
+    return parser.parse_args()
+
+
+def run(args):
+    rohub.settings.SLEEP_TIME = 10
+    
+    USE_DEVELOPMENT_VERSION = True
+    if USE_DEVELOPMENT_VERSION:
+        rohub.settings.API_URL = "https://rohub2020-rohub.apps.paas-dev.psnc.pl/api/"
+        rohub.settings.KEYCLOAK_CLIENT_ID = "rohub2020-cli"
+        rohub.settings.KEYCLOAK_CLIENT_SECRET = "714617a7-87bc-4a88-8682-5f9c2f60337d"
+        rohub.settings.KEYCLOAK_URL = "https://keycloak-dev.apps.paas-dev.psnc.pl/auth/realms/rohub/protocol/openid-connect/token"
+        rohub.settings.SPARQL_ENDPOINT = (
+            "https://rohub2020-api-virtuoso-route-rohub.apps.paas-dev.psnc.pl/sparql/"
+        )
+
+    rohub.login(args.username, args.password)
+    
+    my_ros = rohub.list_my_ros()
+
+    try:
+        for _, row in my_ros.iterrows():
+            rohub.ros_delete(row["identifier"])
+    except Exception as error:
+        print(f"Error on Deleteing RoHub: {error}")
+
+    identifier = ""
+    uuid = ""
+    try:
+        upload_result = rohub.ros_upload(path_to_zip=args.provenance_folderpath)
+        identifier = upload_result["identifier"]
+        uuid = upload_result["results"].rstrip("/").split("/")[-1]
+    except Exception as error:
+        print(f"Error on Upload RoHub: {error}")
+
+    timeout_seconds = 5 * 60
+    poll_interval = 10
+    start_time = time.time()
+
+    while True:
+        success_result = rohub.is_job_success(job_id=identifier)
+        status = success_result.get("status", "UNKNOWN")
+
+        if status == "SUCCESS":
+            print(f"Upload successful: {success_result}")
+            break
+        elif time.time() - start_time > timeout_seconds:
+            print(f"Upload did not succeed within 5 minutes. Last status: {status}")
+            break
+        else:
+            print(f"Current status: {status}, waiting {poll_interval}s...")
+            time.sleep(poll_interval)
+
+    ANNOTATION_PREDICATE = "http://w3id.org/nfdi4ing/metadata4ing#investigates"
+    ANNOTATION_OBJECT = "https://github.com/BAMresearch/NFDI4IngModelValidationPlatform/tree/main/benchmarks/linear-elastic-plate-with-hole"
+
+    if (uuid != ""):
+        _RO = rohub.ros_load(uuid)
+        annotation_json = [{"property": ANNOTATION_PREDICATE, "value": ANNOTATION_OBJECT}]
+        add_annotations_result = _RO.add_annotations(
+            body_specification_json=annotation_json
+        )
+        print(add_annotations_result)
+
+def main():
+    args = parse_args()
+    run(args)
+
+
+if __name__ == "__main__":
+    main()