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fix abba-warpy version number
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-32
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biop-catalog-generator.groovy

Lines changed: 31 additions & 32 deletions
Original file line numberDiff line numberDiff line change
@@ -69,69 +69,68 @@ var cellposeExtension = new Extension(
6969
extensionList.add(cellposeExtension)
7070

7171

72-
// ------------------------ ABBA EXTENSION
73-
74-
def abbaTagList = ["0.4.0"]
75-
def abbaVersionList = []
76-
abbaTagList.each{tag->
77-
var abbaRelease = new Release(
72+
// ------------------------ WARPY EXTENSION
73+
def warpyTagList = ["0.4.2"]
74+
def warpyVersionList = []
75+
warpyTagList.each{tag->
76+
var warpyRelease = new Release(
7877
"v"+tag,
79-
new URI(gh_biop_url +"qupath-extension-abba/releases/download/" +tag+ "/qupath-extension-abba-" +tag+ ".jar"),
78+
new URI(gh_biop_url +"qupath-extension-warpy/releases/download/" +tag+ "/qupath-extension-warpy-"+tag+ ".jar"),
8079
List.of(new URI(mvn_sj_url +"net/imglib2/imglib2-realtransform/" +imglib2_realtransform_version+"/imglib2-realtransform-" +imglib2_realtransform_version+".jar"), // real-transform
8180
new URI(mvn_central_url+"net/imglib2/imglib2/" +imglib2_version+ "/imglib2-" +imglib2_version+ ".jar"), // imglib2
8281
new URI(mvn_sj_url +"jitk/jitk-tps/" +jitk_tps_version+ "/jitk-tps-" +jitk_tps_version+ ".jar"), // jitk-tps
8382
new URI(mvn_central_url+"com/googlecode/efficient-java-matrix-library/ejml/"+ejml_version+ "/ejml-" +ejml_version+ ".jar"), // ejml
84-
new URI(mvn_central_url+"gov/nist/math/jama/" +jama_version+ "/jama-" +jama_version+ ".jar"), // jama
85-
new URI(gh_biop_url +"qupath-extension-warpy/releases/download/" +tag+ "/qupath-extension-warpy-"+tag+ ".jar") // warpy
86-
83+
new URI(mvn_central_url+"gov/nist/math/jama/" +jama_version+ "/jama-" +jama_version+ ".jar") // jama
8784
),
8885
null,
8986
null,
9087
qupathMinVersionRange
9188
)
9289

93-
abbaVersionList.add(abbaRelease)
90+
warpyVersionList.add(warpyRelease)
9491
}
95-
var abbaExtension = new Extension(
96-
"QuPath ABBA extension",
97-
"QuPath extension to use Aligning Big Brain and Atlases",
92+
var warpyExtension = new Extension(
93+
"QuPath Warpy extension",
94+
"Warpy - QuPath extension that supports transformations (affine, spline) of images.",
9895
"BIOP",
99-
new URI("https://github.com/BIOP/qupath-extension-abba"),
96+
new URI("https://github.com/BIOP/qupath-extension-warpy"),
10097
false,
101-
abbaVersionList
98+
warpyVersionList
10299
)
103-
extensionList.add(abbaExtension)
100+
extensionList.add(warpyExtension)
104101

105-
// ------------------------ WARPY EXTENSION
106-
def warpyTagList = ["0.4.2"]
107-
def warpyVersionList = []
108-
warpyTagList.each{tag->
109-
var warpyRelease = new Release(
102+
103+
// ------------------------ ABBA EXTENSION
104+
def abbaTagList = ["0.4.0"]
105+
def abbaVersionList = []
106+
abbaTagList.each{tag->
107+
var abbaRelease = new Release(
110108
"v"+tag,
111-
new URI(gh_biop_url +"qupath-extension-warpy/releases/download/" +tag+ "/qupath-extension-warpy-"+tag+ ".jar"),
109+
new URI(gh_biop_url +"qupath-extension-abba/releases/download/" +tag+ "/qupath-extension-abba-" +tag+ ".jar"),
112110
List.of(new URI(mvn_sj_url +"net/imglib2/imglib2-realtransform/" +imglib2_realtransform_version+"/imglib2-realtransform-" +imglib2_realtransform_version+".jar"), // real-transform
113111
new URI(mvn_central_url+"net/imglib2/imglib2/" +imglib2_version+ "/imglib2-" +imglib2_version+ ".jar"), // imglib2
114112
new URI(mvn_sj_url +"jitk/jitk-tps/" +jitk_tps_version+ "/jitk-tps-" +jitk_tps_version+ ".jar"), // jitk-tps
115113
new URI(mvn_central_url+"com/googlecode/efficient-java-matrix-library/ejml/"+ejml_version+ "/ejml-" +ejml_version+ ".jar"), // ejml
116-
new URI(mvn_central_url+"gov/nist/math/jama/" +jama_version+ "/jama-" +jama_version+ ".jar") // jama
114+
new URI(mvn_central_url+"gov/nist/math/jama/" +jama_version+ "/jama-" +jama_version+ ".jar"), // jama
115+
new URI(gh_biop_url +"qupath-extension-warpy/releases/download/" +warpyTagList[0]+ "/qupath-extension-warpy-"+tag+ ".jar") // warpy
116+
117117
),
118118
null,
119119
null,
120120
qupathMinVersionRange
121121
)
122122

123-
warpyVersionList.add(warpyRelease)
123+
abbaVersionList.add(abbaRelease)
124124
}
125-
var warpyExtension = new Extension(
126-
"QuPath Warpy extension",
127-
"Warpy - QuPath extension that supports transformations (affine, spline) of images.",
125+
var abbaExtension = new Extension(
126+
"QuPath ABBA extension",
127+
"QuPath extension to use Aligning Big Brain and Atlases",
128128
"BIOP",
129-
new URI("https://github.com/BIOP/qupath-extension-warpy"),
129+
new URI("https://github.com/BIOP/qupath-extension-abba"),
130130
false,
131-
warpyVersionList
131+
abbaVersionList
132132
)
133-
extensionList.add(warpyExtension)
134-
133+
extensionList.add(abbaExtension)
135134

136135
// spotiflow extension
137136
/*def spotiflowTagList = ["v0.2.0"]

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