ENH: Updating version tag to v5.4.0

This is the tagged version for the PREDICTHD_BIDS_DEFACE
public dataset distribution.

Author: hjmjohnson

ARCHIVE/BRAINSTalairach/BRAINSTalairach.xml

@@ -8,7 +8,7 @@
   </title>
   <description>
   This program creates a VTK structured grid defining the Talairach coordinate system based on four points: AC, PC, IRP, and SLA. The resulting structred grid can be written as either a classic VTK file or the new VTK XML file format. Two representations of the resulting grid can be written. The first is a bounding box representation that also contains the location of the AC and PC points. The second representation is the full Talairach grid representation that includes the additional rows of boxes added to the inferior allowing full coverage of the cerebellum. </description>
-  <version>5.3.2</version>
+  <version>5.4.0</version>
   <documentation-url>http://www.nitrc.org/plugins/mwiki/index.php/brains:BRAINSTalairach</documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor>

ARCHIVE/BRAINSTalairach/BRAINSTalairachMask.xml

@@ -8,7 +8,7 @@
   </title>
   <description>
   This program creates a binary image representing the specified Talairach region. The input is an example image to define the physical space for the resulting image, the Talairach grid representation in VTK format, and the file containing the Talairach box definitions to be generated. These can be combined in BRAINS to create a label map using the procedure Brains::WorkupUtils::CreateLabelMapFromBinaryImages. </description>
-  <version>5.3.2</version>
+  <version>5.4.0</version>
   <documentation-url>http://www.nitrc.org/plugins/mwiki/index.php/brains:BRAINSTalairachMask</documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor>

BRAINSABC/brainseg/GenerateLabelMapFromProbabilityMap.xml

@@ -5,7 +5,7 @@
   <description>
     Given a list of probability maps for labels, create a discrete label map where only the highest probability region is used for the labeling.
   </description>
-  <version>5.3.2</version>
+  <version>5.4.0</version>
   <documentation-url></documentation-url>
   <license></license>
   <contributor>University of Iowa Department of Psychiatry, http:://www.psychiatry.uiowa.edu

BRAINSABC/brainseg/GeneratePurePlugMask.xml

@@ -5,7 +5,7 @@
   <description>
     This program gets several modality image files and returns a binary mask that defines the pure plugs.
   </description>
-  <version>5.3.2</version>
+  <version>5.4.0</version>
   <documentation-url> </documentation-url>
   <license> </license>
   <contributor>Ali Ghayoor</contributor>

BRAINSCommonLib/TestSuite/FindCenterOfBrain.xml

@@ -7,7 +7,7 @@
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>
   <contributor>Hans J. Johnson, hans-johnson -at- uiowa.edu, http://wwww.psychiatry.uiowa.edu</contributor>
   <acknowledgements>Hans Johnson(1,3,4); Kent Williams(1);  (1=University of Iowa Department of Psychiatry, 3=University of Iowa Department of Biomedical Engineering, 4=University of Iowa Department of Electrical and Computer Engineering</acknowledgements>
-  <version>5.3.2</version>
+  <version>5.4.0</version>
   <parameters advanced="false">
     <label>Required Input Parameters</label>
     <image>

BRAINSConstellationDetector/TestSuite/LandmarksCompare.xml

@@ -5,7 +5,7 @@
   <description>
     Compares two .fcsv or .wts text files and verifies that they are identicle.  Used for testing landmarks files.
   </description>
-  <version>5.3.2</version>
+  <version>5.4.0</version>
   <documentation-url> </documentation-url>
   <license> </license>
   <contributor>Ali Ghayoor</contributor>

BRAINSConstellationDetector/gui/BRAINSConstellationDetectorGUI.xml

@@ -6,7 +6,7 @@
       This program provides the user with a GUI tool to view/manipulate landmarks for an input volume.
     </description>
 
-    <version>5.3.2</version>
+    <version>5.4.0</version>
     <documentation-url>http://www.nitrc.org/projects/brainscdetector/</documentation-url>
     <parameters>
         <image>

BRAINSConstellationDetector/landmarkStatistics/GenerateAverageLmkFile.xml

@@ -5,7 +5,7 @@
   <description>
     This program gets several fcsv file each one contains several landmarks with the same name but slightly different coordinates. For EACH landmark we compute the average coordination.
   </description>
-  <version>5.3.2</version>
+  <version>5.4.0</version>
   <documentation-url> </documentation-url>
   <license> </license>
   <contributor>Ali Ghayoor</contributor>

BRAINSConstellationDetector/src/BRAINSClipInferior.xml

@@ -5,7 +5,7 @@
     <description>This program will read the inputVolume as a short int image, write the BackgroundFillValue everywhere inferior to the lower bound, and write the resulting clipped short int image in the outputVolume.
     </description>
 
-    <version>5.3.2</version>
+    <version>5.4.0</version>
     <parameters>
         <image>
             <name>inputVolume</name>

BRAINSConstellationDetector/src/BRAINSConstellationDetector.xml

@@ -7,7 +7,7 @@
   </description>
   <contributor>Hans J. Johnson (hans-johnson -at- uiowa.edu), Ali Ghayoor</contributor>
   <acknowledgements><![CDATA[Hans Johnson(1,2,3); Ali Ghayoor(3); Wei Lu(3) 1=University of Iowa Department of Psychiatry, 2=University of Iowa Department of Biomedical Engineering, 3=University of Iowa Department of Electrical and Computer Engineering]]>  </acknowledgements>
-  <version>5.3.2</version>
+  <version>5.4.0</version>
   <documentation-url>http://www.nitrc.org/projects/brainscdetector/</documentation-url>
   <license>https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt</license>