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Graph functionality #1

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zhihuidu
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RMAT graph generator.

zhihuidu and others added 30 commits November 19, 2020 10:33
@zhihuidu
add the suffix array function to Arkouda
65ad500
@zhihuidu
add suffix array benchmark sa.py
7af0b51
@zhihuidu
add read file suffix array function and all libdivsufsort files
d288c10
@zhihuidu
change name
9a22704
@zhihuidu
add suffix_array Python test
c81d755
@zhihuidu
add Chapel skew suffix array algorithm
dbd6d96
@zhihuidu
add the lcp array method
21df359
@zhihuidu
confirm submit all changes
940cb79
@zhihuidu
add thirdpary files
9f22f79
@zhihuidu
solve conflict
3a220dc
@zhihuidu
add thirdparty files
4131820
@dbader13
updated
c9e03fb
@alvaradoo
Update SACA.chpl comments
d184048 
reworded and added some comments
@zhihuidu
Merge pull request #3 from alvaradoo/patch-1
8f88f4c 
Update SACA.chpl comments
@zhihuidu
remove tab, remove unused codes
b6228e5
@zhihuidu
change to relative directory
42e3ba7
@zhihuidu
include sa.py into run_benchmarks.py
9702d46
@zhihuidu
suffix_arry_file updated
7a0b197
@zhihuidu
remove tab in MultiTypeSymEntry.chpl
e90ca27
@zhihuidu
datatype in string.py
2db17d8
@zhihuidu
remove suffixarray_test.py
da30cfa
@zhihuidu
update third party config
6b6e41a
@zhihuidu
follow suggestions from community
38818a3
@zhihuidu
solve the conflict
32ecc0c
@zhihuidu
update the SegSArray
a6c536e
@zhihuidu
remove unused import
16cca77
@zhihuidu
align with strings function
9d60563
@zhihuidu
correct a typo
59174ac
@zhihuidu
type match
0cda91d
@zhihuidu
data type
e1c3173
zhihuidu added 30 commits January 4, 2021 17:23
@zhihuidu
update lcp related code
221679e
@zhihuidu
Merge pull request #4 from reuster986/master
a8a195a 
Fixed bug in UnitTestPeelStick
@zhihuidu
remove the enhenced attribute in sym table
0bff3e4
@zhihuidu
check the comments to remove docs CI check error
2af5ce8
@zhihuidu
solve the sphinx error
2d40c0e
@zhihuidu
add switch betwteen different SA algorithms
c782b5a
@zhihuidu
single locales for C code
00b3579
@zhihuidu
resolve convlict
80f78c6
@zhihuidu
return the string for suffix_array_file
010a446
@zhihuidu
remove mypy CI check error
f5ca67a
@zhihuidu
tuple data type
6d65335
@zhihuidu
update the partial results in graph
45346d0
@zhihuidu
update bool parameters
0807221
@zhihuidu
RAMT benchmark
830377f
@zhihuidu
remove print information
d06e6f3
@zhihuidu
comment some graph functions
380668c
@zhihuidu
update graph class
c6a3946
@zhihuidu
vertex model, add start_i
0e47e48
@zhihuidu
implement bfs algorithm
07906d7
@zhihuidu
add bfs.py, remove bugs
b12bfde
@zhihuidu
check comipling error
73a5bcf
@zhihuidu
add graph read function and benchmark
031f947
@zhihuidu
bfs return one array
13e19e8
@zhihuidu
use for instead of forall
eb00b06
@zhihuidu
forall intention
9142d28
@zhihuidu
add use set
b254e5b
@zhihuidu
change bfs.py parameters
758cceb
@zhihuidu
add data filtering patterns
0448771
@zhihuidu
only fillInt
0fc3f40
@zhihuidu
reorganize the rmat bfs code
08374f6
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4 participants
@zhihuidu @dbader13 @alvaradoo @reuster986