Fix mastermap command not showing common files in status message.

Author: mikekucera

EnrichmentMapPlugin/src/main/java/org/baderlab/csplugins/enrichmentmap/commands/MastermapCommandTask.java

@@ -75,11 +75,6 @@ public void run(TaskMonitor tm) throws Exception {
 		taskManager.execute(new TaskIterator(resolverTask)); // blocks
 		List<DataSetParameters> dataSets = resolverTask.getDataSetResults();
 
-		tm.setStatusMessage("resolved " + dataSets.size() + " data sets");
-		for(DataSetParameters params : dataSets) {
-			tm.setStatusMessage(params.toString());
-		}
-		
 		// Common gmt and expression files
 		// Overwrite all the expression files if the common file has been provided
 		if(commonExpressionFile != null) {
@@ -110,6 +105,11 @@ public void run(TaskMonitor tm) throws Exception {
 				dsp.getFiles().setClassFile(commonClassFile.getAbsolutePath());
 			}
 		}
+
+		tm.setStatusMessage("resolved " + dataSets.size() + " data sets");
+		for(DataSetParameters params : dataSets) {
+			tm.setStatusMessage(params.toString());
+		}
 
 		tm.setStatusMessage(filterArgs.toString());