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Minor change to how AA is run
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2 files changed

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-2
lines changed

2 files changed

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-2
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EnrichmentMapPlugin/src/main/java/org/baderlab/csplugins/enrichmentmap/task/AutoAnnotateInitTask.java

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -30,7 +30,7 @@ public AutoAnnotateInitTask(@Assisted String dataset) {
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public void run(TaskMonitor tm) {
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var commandAvailable = dependencyCheckerProvider.get().isCommandAvailable("autoannotate", "eminit");
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if(commandAvailable) {
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var tasks = commandTaskFactory.createTaskIterator(null, "autoannotate eminit dataSet=\"" + dataset + "\"");
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var tasks = commandTaskFactory.createTaskIterator(null, "autoannotate eminit warn=true dataSet=\"" + dataset + "\"");
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insertTasksAfterCurrentTask(tasks);
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}
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}

EnrichmentMapPlugin/src/main/java/org/baderlab/csplugins/enrichmentmap/view/control/ControlPanel.java

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -895,7 +895,7 @@ DataSetSelector getDataSetSelector() {
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JLabel getAutoAnnotateOpenLink() {
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if (aaLink == null) {
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aaLink = SwingUtil.createLinkLabel("Run AutoAnnotate to highlight clusters");
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aaLink = SwingUtil.createLinkLabel("Use AutoAnnotate to find clusters of similar gene-sets");
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aaLink.setVisible(dependencyChecker.isCommandAvailable("autoannotate", "open"));
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aaLink.setBorder(BorderFactory.createEmptyBorder(0, 8, 4, 0));
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}

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