From 218029468bc68b7d11cc114c4fcc40358053ad80 Mon Sep 17 00:00:00 2001 From: Alexander Pico Date: Wed, 13 Dec 2023 17:59:25 -0800 Subject: [PATCH] Update FilterTunables.java these thresholds set a maximum for inclusion, not a minimum, right? --- .../enrichmentmap/commands/tunables/FilterTunables.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/EnrichmentMapPlugin/src/main/java/org/baderlab/csplugins/enrichmentmap/commands/tunables/FilterTunables.java b/EnrichmentMapPlugin/src/main/java/org/baderlab/csplugins/enrichmentmap/commands/tunables/FilterTunables.java index 36f56ab7..ea702a8d 100644 --- a/EnrichmentMapPlugin/src/main/java/org/baderlab/csplugins/enrichmentmap/commands/tunables/FilterTunables.java +++ b/EnrichmentMapPlugin/src/main/java/org/baderlab/csplugins/enrichmentmap/commands/tunables/FilterTunables.java @@ -26,10 +26,10 @@ */ public class FilterTunables { - @Tunable(description = "P-value Cutoff (value between 0 and 1). Gene set nodes with a p-value lower than the given value will not be included in the network.") + @Tunable(description = "P-value Cutoff (value between 0 and 1). Gene set nodes with a p-value greater than the given value will not be included in the network.") public Double pvalue = 0.005; - @Tunable(description = "FDR Q-value Cutoff (value between 0 and 1). Gene set nodes with a q-value lower than the one entered will not be included in the network.") + @Tunable(description = "FDR Q-value Cutoff (value between 0 and 1). Gene set nodes with a q-value greater than the one entered will not be included in the network.") public Double qvalue = 0.1; @Tunable(description = "Similarity Cutoff (value between 0 and 1). Edges with a similarity score lower than the one entered will not be included in the network.")