scMixology dataset to the repo for tutorial

delipouya · delipouya · commit 59fa2650b2ec · 2024-05-17T14:45:56.000-04:00
diff --git a/Data/scMix_3cl_merged.h5ad b/Data/scMix_3cl_merged.h5ad
diff --git a/example_healthyHumanKidney.py b/example_healthyHumanKidney.py
@@ -23,7 +23,7 @@
 NUM_COMP_TO_VIS = 5
 
 
-data_file_path = '/home/delaram/sciFA//Data/Human_Kidney_data.h5ad'  ### data is already normalized
+data_file_path = '/home/delaram/sciFA/Data/Human_Kidney_data.h5ad'  ### data is already normalized
 data = exproc.import_AnnData(data_file_path)  ## based on scanpy
 
 data, gene_idx = proc.get_sub_data(data, num_genes=5000) # subset the data to num_genes HVGs
diff --git a/example_scMixology.py b/example_scMixology.py
@@ -25,7 +25,7 @@
 NUM_GENES = 2000
 NUM_COMP_TO_VIS = 5
 
-data_file_path = '/home/delaram/sciFA/Data/scMix_3cl_merged.h5ad'
+data_file_path = '/home/delaram/sciRED/Data/scMix_3cl_merged.h5ad'
 data = exproc.import_AnnData(data_file_path)
 data, gene_idx = proc.get_sub_data(data, num_genes=NUM_GENES) # subset the data to num_genes HVGs
 y, genes, num_cells, num_genes = proc.get_data_array(data)
