You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Copy file name to clipboardExpand all lines: README.md
+3Lines changed: 3 additions & 0 deletions
Display the source diff
Display the rich diff
Original file line number
Diff line number
Diff line change
@@ -44,11 +44,14 @@ Numba needs NumPy 1.24 or less
44
44
```
45
45
Detailed package version information is provided in the requirements.txt file.
46
46
47
+
Installation, verified on Linux and Unix systems, takes less than a minute once all dependencies are resolved.
47
48
48
49
## Tutorial
49
50
50
51
Follow [tutorial-1](https://github.com/delipouya/sciRED/blob/main/tutorial1_scMixology.ipynb) and [tutorial-2](https://github.com/delipouya/sciRED/blob/main/tutorial2_stimulatedPBMC.ipynb) to learn how to use sciRED. These tutorials introduce the standard processing pipeline and demonstrate the application of sciRED on the scMixology and stimulated PBMC datasets. Further details about the input datasets are available in the manuscript. The data processing scripts are available in the _data_prep_ folder.
51
52
53
+
The input data for Tutorial 1 is provided in the "Data" folder. Instructions for downloading and saving data for Tutorial 2 can be found in the `data_stimPBMC.R` script inside the _data_prep_ folder. The demo for Tutorial 1 took less than a minute to run on a workstation with 24 CPUs and 64 GB RAM.
0 commit comments