Merge pull request #53 from vandenman/fix_adaMala_debug

Author: vandenman

src/bgmCompare_sampler.cpp

@@ -670,12 +670,12 @@ SamplerOutput run_gibbs_sampler_for_bgmCompare(
     const arma::uvec& is_ordinal_variable,
     const arma::ivec& baseline_category,
     const bool difference_selection,//new
-    const arma::imat main_effect_indices,
-    const arma::imat pairwise_effect_indices,
+    const arma::imat& main_effect_indices,
+    const arma::imat& pairwise_effect_indices,
     const double target_accept,
     const int nuts_max_depth,
     const bool learn_mass_matrix,
-    const arma::mat projection,//new
+    const arma::mat& projection,//new
     const arma::ivec& group_membership,//new
     const arma::imat& group_indices,//new
     const arma::imat& interaction_index_matrix,//new

src/bgmCompare_sampler.h

@@ -7,30 +7,30 @@
 SamplerOutput run_gibbs_sampler_for_bgmCompare(
     int chain_id,
     arma::imat observations,
-    int num_groups,
+    const int num_groups,
     std::vector<arma::imat> num_obs_categories,
     std::vector<arma::imat> sufficient_blume_capel,
     std::vector<arma::mat> sufficient_pairwise,
     const arma::ivec& num_categories,
-    double main_alpha,
-    double main_beta,
-    double pairwise_scale,
-    double difference_scale,
-    double difference_selection_alpha,
-    double difference_selection_beta,
+    const double main_alpha,
+    const double main_beta,
+    const double pairwise_scale,
+    const double difference_scale,
+    const double difference_selection_alpha,
+    const double difference_selection_beta,
     const std::string& difference_prior,
-    int iter,
-    int burnin,
-    bool na_impute,
+    const int iter,
+    const int burnin,
+    const bool na_impute,
     const arma::imat& missing_data_indices,
     const arma::uvec& is_ordinal_variable,
     const arma::ivec& baseline_category,
-    bool difference_selection,
+    const bool difference_selection,
     const arma::imat& main_effect_indices,
     const arma::imat& pairwise_effect_indices,
-    double target_accept,
-    int nuts_max_depth,
-    bool learn_mass_matrix,
+    const double target_accept,
+    const int nuts_max_depth,
+    const bool learn_mass_matrix,
     const arma::mat& projection,
     const arma::ivec& group_membership,
     const arma::imat& group_indices,